Simultaneous profiling of transcriptome and DNA methylome from a single cell

Y Hu, K Huang, Q An, G Du, G Hu, J Xue, X Zhu… - Genome biology, 2016 - Springer
Background Single-cell transcriptome and single-cell methylome technologies have become
powerful tools to study RNA and DNA methylation profiles of single cells at a genome-wide …

The relationship between DNA methylation, genetic and expression inter-individual variation in untransformed human fibroblasts

JR Wagner, S Busche, B Ge, T Kwan, T Pastinen… - Genome biology, 2014 - Springer
Background DNA methylation plays an essential role in the regulation of gene expression.
While its presence near the transcription start site of a gene has been associated with …

Passive and active DNA methylation and the interplay with genetic variation in gene regulation

M Gutierrez-Arcelus, T Lappalainen, SB Montgomery… - elife, 2013 - elifesciences.org
DNA methylation is an essential epigenetic mark whose role in gene regulation and its
dependency on genomic sequence and environment are not fully understood. In this study …

Comparative methylome analyses identify epigenetic regulatory loci of human brain evolution

I Mendizabal, L Shi, TE Keller… - Molecular biology …, 2016 - academic.oup.com
How do epigenetic modifications change across species and how do these modifications
affect evolution? These are fundamental questions at the forefront of our evolutionary …

DNA methylation: insights into human evolution

I Hernando-Herraez, R Garcia-Perez, AJ Sharp… - PLoS …, 2015 - journals.plos.org
A fundamental initiative for evolutionary biologists is to understand the molecular basis
underlying phenotypic diversity. A long-standing hypothesis states that species-specific traits …

Epigenetic profiling of somatic tissues from human autopsy specimens identifies tissue-and individual-specific DNA methylation patterns

HM Byun, KD Siegmund, F Pan… - Human molecular …, 2009 - academic.oup.com
DNA methylation is known to be associated with cell differentiation, aging, disease and
cancer. There exists an expanding base of knowledge regarding tissue-specific DNA …

High resolution methylome map of rat indicates role of intragenic DNA methylation in identification of coding region

S Sati, VS Tanwar, KA Kumar, A Patowary, V Jain… - PloS one, 2012 - journals.plos.org
DNA methylation is crucial for gene regulation and maintenance of genomic stability. Rat
has been a key model system in understanding mammalian systemic physiology, however …

Epigenomic profiling indicates a role for DNA methylation in early postnatal liver development

RA Waterland, R Kellermayer… - Human molecular …, 2009 - academic.oup.com
The question of whether DNA methylation contributes to the stabilization of gene expression
patterns in differentiated mammalian tissues remains controversial. Using genome-wide …

Characterization of tissue-specific differential DNA methylation suggests distinct modes of positive and negative gene expression regulation

J Wan, VF Oliver, G Wang, H Zhu, DJ Zack, SL Merbs… - BMC genomics, 2015 - Springer
Background DNA methylation plays an important role in regulating gene expression during
many biological processes. However, the mechanism of DNA-methylation-dependent gene …

Gene and transposable element methylation in great tit (Parus major) brain and blood

MFL Derks, KM Schachtschneider, O Madsen… - Bmc Genomics, 2016 - Springer
Background Studies on vertebrate DNA methylomes have revealed a regulatory role of
tissue specific DNA methylation in relation to gene expression. However, it is not well known …