Dynamics of DNA hydroxymethylation in zebrafish

JH Kamstra, M Løken, P Aleström, J Legler - Zebrafish, 2015 - liebertpub.com
During embryonic development in mammals, most of the methylated cytosines in the
paternal genome are converted to 5-hydroxymethyldeoxycytidine (hmC), as part of DNA …

Comparative analysis of genome-scale, base-resolution DNA methylation profiles across 580 animal species

J Klughammer, D Romanovskaia, A Nemc… - Nature …, 2023 - nature.com
Methylation of cytosines is a prototypic epigenetic modification of the DNA. It has been
implicated in various regulatory mechanisms across the animal kingdom and particularly in …

Convergent evolution of a vertebrate-like methylome in a marine sponge

A de Mendoza, WL Hatleberg, K Pang… - Nature ecology & …, 2019 - nature.com
Vertebrates have highly methylated genomes at CpG positions, whereas invertebrates have
sparsely methylated genomes. This increase in methylation content is considered a major …

Evolutionary transition of promoter and gene body DNA methylation across invertebrate–vertebrate boundary

TE Keller, P Han, SV Yi - Molecular biology and evolution, 2016 - academic.oup.com
Genomes of invertebrates and vertebrates exhibit highly divergent patterns of DNA
methylation. Invertebrate genomes tend to be sparsely methylated, and DNA methylation is …

Genome-wide and single-base resolution DNA methylomes of the Pacific oyster Crassostrea gigas provide insight into the evolution of invertebrate CpG methylation

X Wang, Q Li, J Lian, L Li, L Jin, H Cai, F Xu, H Qi… - BMC genomics, 2014 - Springer
Background Studies of DNA methylomes in a wide range of eukaryotes have revealed both
conserved and divergent characteristics of DNA methylation among phylogenetic groups …

[HTML][HTML] Location-dependent DNA methylation signatures in a clonal invasive crayfish

S Tönges, G Venkatesh, R Andriantsoa… - Frontiers in Cell and …, 2021 - frontiersin.org
DNA methylation is an important epigenetic modification that has been repeatedly implied in
organismal adaptation. However, many previous studies that have linked DNA methylation …

[HTML][HTML] Genome-wide profiling of DNA methylation and gene expression in Crassostrea gigas male gametes

CE Olson, SB Roberts - Frontiers in physiology, 2014 - frontiersin.org
DNA methylation patterns and functions are variable across invertebrate taxa. In order to
provide a better understanding of DNA methylation in the Pacific oyster (Crassostrea gigas) …

Reprogramming histone modification patterns to coordinate gene expression in early zebrafish embryos

W Zhu, X Xu, X Wang, J Liu - BMC genomics, 2019 - Springer
Background Multicellular organisms require precise gene regulation during ontogeny, and
epigenetic modifications, such as DNA methylation and histone modification, facilitate this …

[HTML][HTML] Genome-wide epigenetic cross-talk between DNA methylation and H3K27me3 in zebrafish embryos

E de la Calle Mustienes, JL Gómez-Skarmeta… - Genomics data, 2015 - Elsevier
DNA methylation and histone modifications are epigenetic marks implicated in the complex
regulation of vertebrate embryogenesis. The cross-talk between DNA methylation and …

The association between DNA methylation and exon expression in the Pacific oyster Crassostrea gigas

K Song, L Li, G Zhang - PLoS One, 2017 - journals.plos.org
Background DNA methylation is one of the most important epigenetic modifications of
eukaryotic genomes and is believed to play integral roles in diverse biological processes …