A novel approach to the discovery of survival biomarkers in glioblastoma using a joint analysis of DNA methylation and gene expression

AA Smith, YT Huang, M Eliot, EA Houseman… - Epigenetics, 2014 - Taylor & Francis
Glioblastoma multiforme (GBM) is the most aggressive of all brain tumors, with a median
survival of less than 1.5 years. Recently, epigenetic alterations were found to play key roles …

Multi‐omic integration of DNA methylation and gene expression data reveals molecular vulnerabilities in glioblastoma

P Santamarina‐Ojeda, JR Tejedor, RF Pérez… - Molecular …, 2023 - Wiley Online Library
Glioblastoma (GBM) is one of the most aggressive types of cancer and exhibits profound
genetic and epigenetic heterogeneity, making the development of an effective treatment a …

DNA methylation in glioblastoma: impact on gene expression and clinical outcome

A Etcheverry, M Aubry, M De Tayrac, E Vauleon… - BMC genomics, 2010 - Springer
Background Changes in promoter DNA methylation pattern of genes involved in key
biological pathways have been reported in glioblastoma. Genome-wide assessments of …

Methylation-specific multiplex ligation-dependent probe amplification identifies promoter methylation events associated with survival in glioblastoma

KL Rankeillor, DA Cairns, C Loughrey, SC Short… - Journal of Neuro …, 2014 - Springer
DNA methylation plays an important role in cancer biology and methylation events are
important prognostic and predictive markers in many tumor types. We have used methylation …

Integrative analysis of DNA methylation suggests down-regulation of oncogenic pathways and reduced somatic mutation rates in survival outliers of glioblastoma

T Hwang, D Mathios, KL McDonald, I Daris… - Acta neuropathologica …, 2019 - Springer
The study of survival outliers of glioblastoma can provide important clues on gliomagenesis
as well as on the ways to alter clinical course of this almost uniformly lethal cancer type …

Genome-wide methylation profiling reveals new biomarkers for prognosis prediction of glioblastoma

J Ma, X Hou, M Li, H Ren, S Fang… - Journal of cancer …, 2015 - journals.lww.com
Objective: To identify a specific hypermethylated molecular biomarker for human malignant
glioblastoma prognosis. Materials and Methods: Genome-wide methylation profiling was …

Integrative analysis of DNA methylation and gene expression profiles to identify biomarkers of glioblastoma

MR Alivand, S Najafi, S Esmaeili, D Rahmanpour… - Cancer genetics, 2021 - Elsevier
Glioblastoma multiforme (GBM) is the most common, most invasive, and malignant type of
primary brain tumor with poor prognosis and poor survival rate. Using GSE22891 the …

DNA methylation analysis identifies patterns in progressive glioma grades to predict patient survival

J Weng, N Salazar - International journal of molecular sciences, 2021 - mdpi.com
DNA methylation is an epigenetic change to the genome that impacts gene activities without
modification to the DNA sequence. Alteration in the methylation pattern is a naturally …

Unveiling new interdependencies between significant DNA methylation sites, gene expression profiles and glioma patients survival

MJ Dabrowski, M Draminski, K Diamanti, K Stepniak… - Scientific reports, 2018 - nature.com
In order to find clinically useful prognostic markers for glioma patients' survival, we employed
Monte Carlo Feature Selection and Interdependencies Discovery (MCFS-ID) algorithm on …

[HTML][HTML] Integrative analysis of DNA methylation and gene expression identify a three-gene signature for predicting prognosis in lower-grade gliomas

WJ Zeng, YL Yang, ZZ Liu, ZP Wen, YH Chen… - Cellular physiology and …, 2018 - karger.com
Background/Aims: In the current study, we performed an integrated analysis of genome-wide
methylation and gene expression data to find novel prognostic genes for lower-grade …