Genome-wide analysis of promoter methylation associated with gene expression profile in pancreatic adenocarcinoma

A Vincent, N Omura, SM Hong, A Jaffe, J Eshleman… - Clinical cancer …, 2011 - AACR
Purpose: The goal of this study was to comprehensively identify CpG island methylation
alterations between pancreatic cancers and normal pancreata and their associated gene …

Methylation of the oestrogen receptor CpG island links ageing and neoplasia in human colon

JPJ Issa, YL Ottaviano, P Celano, SR Hamilton… - Nature …, 1994 - nature.com
We report that CpG island methylation, an epigenetic modification of DNA known to correlate
closely with silencing of gene transcription, appears in the oestrogen receptor (ER) gene in …

[HTML][HTML] Primate CpG islands are maintained by heterogeneous evolutionary regimes involving minimal selection

NM Cohen, E Kenigsberg, A Tanay - Cell, 2011 - cell.com
Mammalian CpG islands are key epigenomic elements that were first characterized
experimentally as genomic fractions with low levels of DNA methylation. Currently, CpG …

A DNA methylation atlas of normal human cell types

N Loyfer, J Magenheim, A Peretz, G Cann, J Bredno… - Nature, 2023 - nature.com
DNA methylation is a fundamental epigenetic mark that governs gene expression and
chromatin organization, thus providing a window into cellular identity and developmental …

CpG island methylator phenotype (CIMP) in cancer: causes and implications

JM Teodoridis, C Hardie, R Brown - Cancer letters, 2008 - Elsevier
Strong evidence exists for a subgroup of tumours, from a variety of tissue types, exhibiting
concordant tumour specific DNA methylation: the “CpG island methylator phenotype”(CIMP) …

DNMT1 forms a complex with Rb, E2F1 and HDAC1 and represses transcription from E2F-responsive promoters

KD Robertson, S Ait-Si-Ali, T Yokochi, PA Wade… - Nature …, 2000 - nature.com
Methylation of CpG islands is associated with transcriptional silencing and the formation of
nuclease-resistant chromatin structures enriched in hypoacetylated histones 1, 2, 3. Methyl …

Tumour class prediction and discovery by microarray-based DNA methylation analysis

P Adorján, J Distler, E Lipscher, F Model… - Nucleic acids …, 2002 - academic.oup.com
Aberrant DNA methylation of CpG sites is among the earliest and most frequent alterations
in cancer. Several studies suggest that aberrant methylation occurs in a tumour type-specific …

Hypermethylation of gene body CpG islands predicts high dosage of functional oncogenes in liver cancer

M Arechederra, F Daian, A Yim, SK Bazai… - Nature …, 2018 - nature.com
Epigenetic modifications such as aberrant DNA methylation reshape the gene expression
repertoire in cancer. Here, we used a clinically relevant hepatocellular carcinoma (HCC) …

Partially methylated domains are hypervariable in breast cancer and fuel widespread CpG island hypermethylation

AB Brinkman, S Nik-Zainal, F Simmer… - Nature …, 2019 - nature.com
Global loss of DNA methylation and CpG island (CGI) hypermethylation are key epigenomic
aberrations in cancer. Global loss manifests itself in partially methylated domains (PMDs) …

Large-scale human promoter mapping using CpG islands

IP Ioshikhes, MQ Zhang - Nature genetics, 2000 - nature.com
Vertebrate genomic DNA is generally CpG depleted 1, 2, possibly because methylation of
cytosines at 80% of CpG dinucleotides results in their frequent mutation to thymine, and thus …