Comparative epigenomic profiling of the DNA methylome in mouse and zebrafish uncovers high interspecies divergence

C Zhang, Y Hoshida, KC Sadler - Frontiers in Genetics, 2016 - frontiersin.org
The DNA methylation landscape is dynamically patterned during development and distinct
methylation patterns distinguish healthy from diseased cells. However, whether tissue …

[HTML][HTML] Base-resolution DNA methylation landscape of zebrafish brain and liver

A Chatterjee, PA Stockwell, JA Horsfield, IM Morison… - Genomics Data, 2014 - Elsevier
Zebrafish (Danio rerio) is a vertebrate model organism that is widely used for studying a
plethora of biological questions, including developmental processes, effects of external cues …

Genomics of CpG methylation in developing and developed zebrafish

DM McGaughey, HO Abaan, RM Miller… - G3: Genes …, 2014 - academic.oup.com
DNA methylation is a dynamic process through which specific chromatin modifications can
be stably transmitted from parent to daughter cells. A large body of work has suggested that …

Differential DNA methylation analysis without a reference genome

J Klughammer, P Datlinger, D Printz, NC Sheffield… - Cell Reports, 2015 - cell.com
Genome-wide DNA methylation mapping uncovers epigenetic changes associated with
animal development, environmental adaptation, and species evolution. To address the lack …

Genome-wide DNA methylation profiling in zebrafish

PJ Murphy, BR Cairns - Methods in Cell Biology, 2016 - Elsevier
Genomic DNA methylation functions to repress gene expression by interfering with
transcription factor binding and/or recruiting repressive chromatin machinery. Recent data …

Methylation of genomes and genes at the invertebrate-vertebrate boundary

S Tweedie, J Charlton, V Clark… - Molecular and cellular …, 1997 - Taylor & Francis
Patterns of DNA methylation in animal genomes are known to vary from an apparent
absence of modified bases, via methylation of a minor fraction of the genome, to genome …

DNA methylation patterns provide insight into epigenetic regulation in the Pacific oyster (Crassostrea gigas)

MR Gavery, SB Roberts - BMC genomics, 2010 - Springer
Background DNA methylation is an epigenetic mechanism with important regulatory
functions in animals. While the mechanism itself is evolutionarily ancient, the distribution and …

Genomic context determines the effect of DNA methylation on gene expression in the gut epithelium of Atlantic salmon (Salmo salar)

A Katirtzoglou, SB Hansen, H Sveier, MD Martin… - Epigenetics, 2024 - Taylor & Francis
The canonical view of DNA methylation, a pivotal epigenetic regulation mechanism in
eukaryotes, dictates its role as a suppressor of gene activity, particularly within promoter …

Embryonic DNA methylation: insights from the genomics era

O Bogdanović… - Briefings in functional …, 2014 - academic.oup.com
DNA methylation is an epigenetic mark associated with transcriptional repression and
essential for proper vertebrate development. Because of its association with human …

Epigenomics in marine fishes

DCH Metzger, PM Schulte - Marine Genomics, 2016 - Elsevier
Epigenetic mechanisms are an underappreciated and often ignored component of an
organism's response to environmental change and may underlie many types of phenotypic …