Processive DNA demethylation via DNA deaminase-induced lesion resolution

DM Franchini, CF Chan, H Morgan, E Incorvaia… - PloS one, 2014 - journals.plos.org
Base modifications of cytosine are an important aspect of chromatin biology, as they can
directly regulate gene expression, while DNA repair ensures that those modifications retain …

Single-base resolution analysis of active DNA demethylation using methylase-assisted bisulfite sequencing

H Wu, X Wu, L Shen, Y Zhang - Nature biotechnology, 2014 - nature.com
Active DNA demethylation in mammals involves TET-mediated iterative oxidation of 5-
methylcytosine (5mC)/5-hydroxymethylcytosine (5hmC) and subsequent excision repair of …

DNA repair and the control of DNA methylation

P Schär, O Fritsch - Epigenetics and Disease: Pharmaceutical …, 2011 - Springer
The successful establishment and stable maintenance of cell identity are critical for
organismal development and tissue homeostasis. Cell identity is provided by epigenetic …

Active DNA demethylation by DNA repair: Facts and uncertainties

D Schuermann, AR Weber, P Schär - DNA repair, 2016 - Elsevier
Pathways that control and modulate DNA methylation patterning in mammalian cells were
poorly understood for a long time, although their importance in establishing and maintaining …

[HTML][HTML] Thymine DNA glycosylase is essential for active DNA demethylation by linked deamination-base excision repair

S Cortellino, J Xu, M Sannai, R Moore, E Caretti… - Cell, 2011 - cell.com
DNA methylation is a major epigenetic mechanism for gene silencing. Whereas
methyltransferases mediate cytosine methylation, it is less clear how unmethylated regions …

Demystifying DNA demethylation

CS Nabel, RM Kohli - Science, 2011 - science.org
Variability and adaptability are necessary for overcoming the challenges of multicellular life.
To address this need, nature has evolved a substantial enzymatic toolbox for altering …

[HTML][HTML] Discovery of cytosine deaminases enables base-resolution methylome mapping using a single enzyme

R Vaisvila, SR Johnson, B Yan, N Dai, BM Bourkia… - Molecular Cell, 2024 - cell.com
Deaminases have important uses in modification detection and genome editing. However,
the range of applications is limited by the small number of characterized enzymes. To …

Advances in genome-wide DNA methylation analysis

R Gupta, A Nagarajan, N Wajapeyee - Biotechniques, 2010 - Taylor & Francis
The covalent DNA modification of cytosine at position 5 (5-methylcytosine; 5mC) has
emerged as an important epigenetic mark most commonly present in the context of CpG …

[HTML][HTML] Mediating and maintaining methylation while minimizing mutation: Recent advances on mammalian DNA methyltransferases

X Cheng, RM Blumenthal - Current opinion in structural biology, 2022 - Elsevier
Mammalian genomes are methylated on carbon-5 of many cytosines, mostly in CpG
dinucleotides. Methylation patterns are maintained during mitosis via DNMT1, and …

Editing DNA methylation in the mammalian genome

XS Liu, H Wu, X Ji, Y Stelzer, X Wu, S Czauderna… - Cell, 2016 - cell.com
Mammalian DNA methylation is a critical epigenetic mechanism orchestrating gene
expression networks in many biological processes. However, investigation of the functions …