[PDF][PDF] Pan-cancer landscape of aberrant DNA methylation across human tumors

S Saghafinia, M Mina, N Riggi, D Hanahan, G Ciriello - Cell reports, 2018 - cell.com
The discovery of cancer-associated alterations has primarily focused on genetic variants.
Nonetheless, altered epigenomes contribute to deregulate transcription and promote …

[HTML][HTML] Stability of the CpG island methylator phenotype during glioma progression and identification of methylated loci in secondary glioblastomas

VK Hill, T Shinawi, CJ Ricketts, D Krex, G Schackert… - BMC cancer, 2014 - Springer
Background Grade IV glioblastomas exist in two forms, primary (de novo) glioblastomas
(pGBM) that arise without precursor lesions, and the less common secondary glioblastomas …

Genome-wide analysis of DNA methylation status of CpG islands in embryoid bodies, teratomas, and fetuses

M Kremenskoy, Y Kremenska, J Ohgane… - Biochemical and …, 2003 - Elsevier
Differentiation of embryonic stem (ES) cells into embryoid bodies (EBs) provides an in vitro
system for the study of early lineage determination during mammalian development. We …

[HTML][HTML] Quantitative global and gene-specific promoter methylation in relation to biological properties of neuroblastomas

NB Kiss, P Kogner, JI Johnsen, T Martinsson… - BMC medical …, 2012 - Springer
Background In this study we aimed to quantify tumor suppressor gene (TSG) promoter
methylation densities levels in primary neuroblastoma tumors and cell lines. A subset of …

Genome‐wide DNA methylation analysis of neuroblastic tumors reveals clinically relevant epigenetic events and large‐scale epigenomic alterations localized to …

PG Buckley, S Das, K Bryan, KM Watters… - … Journal of cancer, 2011 - Wiley Online Library
The downregulation of specific genes through DNA hypermethylation is a major hallmark of
cancer, although the extent and genomic distribution of hypermethylation occurring within …

[HTML][HTML] A pyrosequencing assay for the quantitative methylation analysis of the PCDHB gene cluster, the major factor in neuroblastoma methylator phenotype

B Banelli, C Brigati, A Di Vinci, I Casciano… - Laboratory …, 2012 - nature.com
Epigenetic alterations are hallmarks of cancer and powerful biomarkers, whose clinical
utilization is made difficult by the absence of standardization and of common methods of …

Evidence for an instructive mechanism of de novo methylation in cancer cells

I Keshet, Y Schlesinger, S Farkash, E Rand, M Hecht… - Nature …, 2006 - nature.com
DNA methylation has a role in the regulation of gene expression during normal mammalian
development but can also mediate epigenetic silencing of CpG island genes in cancer and …

[HTML][HTML] Genome-wide profiling of DNA methylation in human cancer cells

K Ogoshi, S Hashimoto, Y Nakatani, W Qu, K Oshima… - Genomics, 2011 - Elsevier
Global changes in DNA methylation correlate with altered gene expression and genomic
instability in cancer. We have developed a methylation-specific digital sequencing (MSDS) …

[HTML][HTML] Global DNA methylation patterns in human gliomas and their interplay with other epigenetic modifications

M J. Dabrowski, B Wojtas - International journal of molecular sciences, 2019 - mdpi.com
During the last two decades, several international consortia have been established to unveil
the molecular background of human cancers including gliomas. As a result, a huge outbreak …

Excavating relics of DNA methylation changes during the development of neoplasia

SH Hsiao, THM Huang, YW Leu - Seminars in cancer biology, 2009 - Elsevier
Epigenetic events like DNA methylation are known to regulate gene expression, and
dysregulation of these events is associated with neoplastic proliferation. Here, we provide a …