Gel-free multiplexed reduced representation bisulfite sequencing for large-scale DNA methylation profiling

P Boyle, K Clement, H Gu, ZD Smith, M Ziller, JL Fostel… - Genome biology, 2012 - Springer
Sequencing-based approaches have led to new insights about DNA methylation. While
many different techniques for genome-scale mapping of DNA methylation have been …

The implications of heterogeneous DNA methylation for the accurate quantification of methylation

T Mikeska, ILM Candiloro, A Dobrovic - Epigenomics, 2010 - Taylor & Francis
DNA methylation based biomarkers have considerable potential for molecular diagnostics,
both as tumor specific biomarkers for the early detection or post-therapeutic monitoring of …

Identification of active regulatory regions from DNA methylation data

L Burger, D Gaidatzis, D Schübeler… - Nucleic acids …, 2013 - academic.oup.com
We have recently shown that transcription factor binding leads to defined reduction in DNA
methylation, allowing for the identification of active regulatory regions from high-resolution …

Methods for analysis of specific DNA methylation status

MJ Pajares, C Palanca-Ballester, R Urtasun… - Methods, 2021 - Elsevier
Methylation of CpG dinucleotides plays a crucial role in the regulation of gene expression
and therefore in the development of different pathologies. Aberrant methylation has been …

Quantitative comparison of DNA methylation assays for biomarker development and clinical applications

Nature biotechnology, 2016 - nature.com
DNA methylation patterns are altered in numerous diseases and often correlate with
clinically relevant information such as disease subtypes, prognosis and drug response. With …

Whole-genome DNA methylation profiling using MethylCap-seq

AB Brinkman, F Simmer, K Ma, A Kaan, J Zhu… - Methods, 2010 - Elsevier
MethylCap-seq is a robust procedure for genome-wide profiling of DNA methylation. The
approach consists of the capture of methylated DNA using the MBD domain of MeCP2, and …

DNA methylation landscapes: provocative insights from epigenomics

MM Suzuki, A Bird - Nature reviews genetics, 2008 - nature.com
The genomes of many animals, plants and fungi are tagged by methylation of DNA cytosine.
To understand the biological significance of this epigenetic mark it is essential to know …

Genome-wide, high-resolution DNA methylation profiling using bisulfite-mediated cytosine conversion

J Reinders, CD Vivier, G Theiler, D Chollet… - Genome …, 2008 - genome.cshlp.org
Methylation of cytosines (mC) is essential for epigenetic gene regulation in plants and
mammals. Aberrant mC patterns are associated with heritable developmental abnormalities …

Statistically robust methylation calling for whole-transcriptome bisulfite sequencing reveals distinct methylation patterns for mouse RNAs

C Legrand, F Tuorto, M Hartmann, R Liebers… - Genome …, 2017 - genome.cshlp.org
Cytosine-5 RNA methylation plays an important role in several biologically and
pathologically relevant processes. However, owing to methodological limitations, the …

DNA methylation analysis techniques

C Dahl, P Guldberg - Biogerontology, 2003 - Springer
DNA methylation contributes to the control of gene expression and plays an essential role in
cellular physiology. Well-defined patterns of DNA methylation are established and fixed …