A statistical framework for Illumina DNA methylation arrays
Abstract Motivation: The Illumina BeadArray is a popular platform for profiling DNA
methylation, an important epigenetic event associated with gene silencing and …
methylation, an important epigenetic event associated with gene silencing and …
shinyÉPICo: a graphical pipeline to analyze Illumina DNA methylation arrays
O Morante-Palacios, E Ballestar - Bioinformatics, 2021 - academic.oup.com
Illumina DNA methylation bead arrays provide a cost-effective platform for the simultaneous
analysis of a high number of human samples. However, the analysis can be time …
analysis of a high number of human samples. However, the analysis can be time …
[HTML][HTML] Quantitative cross-validation and content analysis of the 450k DNA methylation array from Illumina, Inc.
J Roessler, O Ammerpohl, J Gutwein, B Hasemeier… - BMC research …, 2012 - Springer
Background The newly released 450k DNA methylation array from Illumina, Inc. offers the
possibility to analyze more than 480,000 individual CpG sites in a user friendly standardized …
possibility to analyze more than 480,000 individual CpG sites in a user friendly standardized …
An evaluation of supervised methods for identifying differentially methylated regions in Illumina methylation arrays
Epigenome-wide association studies (EWASs) have become increasingly popular for
studying DNA methylation (DNAm) variations in complex diseases. The Illumina methylation …
studying DNA methylation (DNAm) variations in complex diseases. The Illumina methylation …
MethylAid: visual and interactive quality control of large Illumina 450k datasets
The Illumina 450k array is a frequently used platform for large-scale genome-wide DNA
methylation studies, ie epigenome-wide association studies. Currently, quality control of …
methylation studies, ie epigenome-wide association studies. Currently, quality control of …
[HTML][HTML] The ENmix DNA methylation analysis pipeline for Illumina BeadChip and comparisons with seven other preprocessing pipelines
Background Illumina DNA methylation arrays are high-throughput platforms for cost-effective
genome-wide profiling of individual CpGs. Experimental and technical factors introduce …
genome-wide profiling of individual CpGs. Experimental and technical factors introduce …
[HTML][HTML] RELIC: a novel dye-bias correction method for Illumina Methylation BeadChip
Abstract Background The Illumina Infinium HumanMethylation450 BeadChip and its
successor, Infinium MethylationEPIC BeadChip, have been extensively utilized in …
successor, Infinium MethylationEPIC BeadChip, have been extensively utilized in …
CpGassoc: an R function for analysis of DNA methylation microarray data
With the increasing availability of high-density methylation microarrays, there has been
growing interest in analysis of DNA methylation data. We have developed CpGassoc, an R …
growing interest in analysis of DNA methylation data. We have developed CpGassoc, an R …
GLINT: a user-friendly toolset for the analysis of high-throughput DNA-methylation array data
GLINT is a user-friendly command-line toolset for fast analysis of genome-wide DNA
methylation data generated using the Illumina human methylation arrays. GLINT, which …
methylation data generated using the Illumina human methylation arrays. GLINT, which …
Minfi: a flexible and comprehensive Bioconductor package for the analysis of Infinium DNA methylation microarrays
Abstract Motivation: The recently released Infinium HumanMethylation450 array (the
'450k'array) provides a high-throughput assay to quantify DNA methylation (DNAm) at∼ 450 …
'450k'array) provides a high-throughput assay to quantify DNA methylation (DNAm) at∼ 450 …