DNA methylation profile of tissue-dependent and differentially methylated regions (T-DMRs) in mouse promoter regions demonstrating tissue-specific gene expression

S Yagi, K Hirabayashi, S Sato, W Li… - Genome …, 2008 - genome.cshlp.org
DNA methylation constitutes an important epigenetic regulation mechanism in many
eukaryotes, although the extent of DNA methylation in the regulation of gene expression in …

Characterization of tissue-specific differential DNA methylation suggests distinct modes of positive and negative gene expression regulation

J Wan, VF Oliver, G Wang, H Zhu, DJ Zack, SL Merbs… - BMC genomics, 2015 - Springer
Background DNA methylation plays an important role in regulating gene expression during
many biological processes. However, the mechanism of DNA-methylation-dependent gene …

An integrated resource for genome-wide identification and analysis of human tissue-specific differentially methylated regions (tDMRs)

VK Rakyan, TA Down, NP Thorne, P Flicek… - Genome …, 2008 - genome.cshlp.org
We report a novel resource (m ethylation p rofiles of D NA, or mPod) for human genome-
wide tissue-specific DNA methylation profiles. mPod consists of three fully integrated parts …

Genome-wide survey reveals dynamic widespread tissue-specific changes in DNA methylation during development

P Liang, F Song, S Ghosh, E Morien, M Qin… - BMC genomics, 2011 - Springer
Background Changes in DNA methylation in the mammalian genome during development
are frequent events and play major roles regulating gene expression and other …

A genome-wide study of DNA methylation patterns and gene expression levels in multiple human and chimpanzee tissues

AA Pai, JT Bell, JC Marioni, JK Pritchard, Y Gilad - PLoS genetics, 2011 - journals.plos.org
The modification of DNA by methylation is an important epigenetic mechanism that affects
the spatial and temporal regulation of gene expression. Methylation patterns have been …

An integrative analysis of DNA methylation and RNA-Seq data for human heart, kidney and liver

L Xie, B Weichel, JE Ohm, K Zhang - BMC systems biology, 2011 - Springer
Background Many groups, including our own, have proposed the use of DNA methylation
profiles as biomarkers for various disease states. While much research has been done …

DNA methylome profiling of human tissues identifies global and tissue-specific methylation patterns

K Lokk, V Modhukur, B Rajashekar, K Märtens, R Mägi… - Genome biology, 2014 - Springer
Background DNA epigenetic modifications, such as methylation, are important regulators of
tissue differentiation, contributing to processes of both development and cancer. Profiling the …

High resolution methylome map of rat indicates role of intragenic DNA methylation in identification of coding region

S Sati, VS Tanwar, KA Kumar, A Patowary, V Jain… - PloS one, 2012 - journals.plos.org
DNA methylation is crucial for gene regulation and maintenance of genomic stability. Rat
has been a key model system in understanding mammalian systemic physiology, however …

Association of tissue-specific differentially methylated regions (TDMs) with differential gene expression

F Song, JF Smith, MT Kimura… - Proceedings of the …, 2005 - National Acad Sciences
Early studies proposed that DNA methylation could have a role in regulating gene
expression during development [Riggs, AD (1975) Cytogenet. Cell Genet. 14, 9–25] …

[HTML][HTML] Tissue specific differentially methylated regions (TDMR): Changes in DNA methylation during development

F Song, S Mahmood, S Ghosh, P Liang, DJ Smiraglia… - Genomics, 2009 - Elsevier
Tissue specific differentially methylated regions (TDMRs) were identified and localized in the
mouse genome using second generation virtual RLGS (vRLGS). Sequenom MassARRAY …