[HTML][HTML] Analysis of tissue-specific differentially methylated regions (TDMs) in humans

E Kitamura, J Igarashi, A Morohashi, N Hida, T Oinuma… - Genomics, 2007 - Elsevier
Alterations in DNA methylation have been implicated in mammalian development. Hence,
the identification of tissue-specific differentially methylated regions (TDMs) is indispensable …

Dynamic DNA methylation across diverse human cell lines and tissues

KE Varley, J Gertz, KM Bowling, SL Parker… - Genome …, 2013 - genome.cshlp.org
As studies of DNA methylation increase in scope, it has become evident that methylation has
a complex relationship with gene expression, plays an important role in defining cell types …

Epigenetics: differential DNA methylation in mammalian somatic tissues

H Nagase, S Ghosh - The FEBS journal, 2008 - Wiley Online Library
Epigenetics refers to heritable phenotypic alterations in the absence of DNA sequence
changes, and DNA methylation is one of the extensively studied epigenetic alterations. DNA …

Comparison of methyl-DNA immunoprecipitation (MeDIP) and methyl-CpG binding domain (MBD) protein capture for genome-wide DNA methylation analysis reveal …

SS Nair, MW Coolen, C Stirzaker, JZ Song… - Epigenetics, 2011 - Taylor & Francis
DNA methylation primarily occurs at CpG dinucleotides in mammals and is a common
epigenetic mark that plays a critical role in the regulation of gene expression. Profiling DNA …

Genome‐wide DNA methylation profiling

M Bibikova, JB Fan - Wiley Interdisciplinary Reviews: Systems …, 2010 - Wiley Online Library
DNA methylation plays a critical role in the regulation of gene expression. The ability to
access the methylation status for a large number of genes or the entire genome should …

Identification and systematic annotation of tissue-specific differentially methylated regions using the Illumina 450k array

RC Slieker, SD Bos, JJ Goeman, JVMG Bovée… - Epigenetics & …, 2013 - Springer
Background DNA methylation has been recognized as a key mechanism in cell
differentiation. Various studies have compared tissues to characterize epigenetically …

[HTML][HTML] Genome-wide profiling of DNA methylation in human cancer cells

K Ogoshi, S Hashimoto, Y Nakatani, W Qu, K Oshima… - Genomics, 2011 - Elsevier
Global changes in DNA methylation correlate with altered gene expression and genomic
instability in cancer. We have developed a methylation-specific digital sequencing (MSDS) …

Epigenetic profiling of somatic tissues from human autopsy specimens identifies tissue-and individual-specific DNA methylation patterns

HM Byun, KD Siegmund, F Pan… - Human molecular …, 2009 - academic.oup.com
DNA methylation is known to be associated with cell differentiation, aging, disease and
cancer. There exists an expanding base of knowledge regarding tissue-specific DNA …

Functional DNA methylation differences between tissues, cell types, and across individuals discovered using the M&M algorithm

B Zhang, Y Zhou, N Lin, RF Lowdon, C Hong… - Genome …, 2013 - genome.cshlp.org
DNA methylation plays key roles in diverse biological processes such as X chromosome
inactivation, transposable element repression, genomic imprinting, and tissue-specific gene …

Genome-wide quantification of the effects of DNA methylation on human gene regulation

AJ Lea, CM Vockley, RA Johnston, CA Del Carpio… - elife, 2018 - elifesciences.org
Changes in DNA methylation are involved in development, disease, and the response to
environmental conditions. However, not all regulatory elements are functionally methylation …