With this latest release of ReMap (http://remap. cisreg. eu), we present a unique collection of
regulatory regions in human, as a result of a large-scale integrative analysis of ChIP-seq …

The large collections of ChIP-seq data rapidly accumulating in public data warehouses
provide genome-wide binding site maps for hundreds of transcription factors (TFs) …

Abstract The Cistrome Data Browser (DB) is a resource of human and mouse cis-regulatory
information derived from ChIP-seq, DNase-seq and ATAC-seq chromatin profiling assays …

The availability of omic data produced from international consortia, as well as from
worldwide laboratories, is offering the possibility both to answer long-standing questions in …

Abstract ReMap (https://remap. univ-amu. fr) aims to provide manually curated, high-quality
catalogs of regulatory regions resulting from a large-scale integrative analysis of DNA …

The increasing volume of ChIP-chip and ChIP-seq data being generated creates a
challenge for standard, integrative and reproducible bioinformatics data analysis platforms …

Gene set enrichment testing can enhance the biological interpretation of ChIP-seq data.
Here, we develop a method, ChIP-Enrich, for this analysis which empirically adjusts for gene …

Abstract ChIP-Atlas (https://chip-atlas. org) is a web service providing both GUI-and API-
based data-mining tools to reveal the architecture of the transcription regulatory landscape …

Next-generation sequencing is revolutionizing the identification of transcription factor
binding sites throughout the human genome. However, the bioinformatics analysis of large …

Chromatin regulatory landscape plays a critical role in many disease processes and embryo
development. Epigenome sequencing technologies such as chromatin immunoprecipitation …