Predicting genome-wide DNA methylation using methylation marks, genomic position, and DNA regulatory elements
Background Recent assays for individual-specific genome-wide DNA methylation profiles
have enabled epigenome-wide association studies to identify specific CpG sites associated …
have enabled epigenome-wide association studies to identify specific CpG sites associated …
Genetics meets DNA methylation in rare diseases
G Velasco, C Francastel - Clinical genetics, 2019 - Wiley Online Library
Alterations in epigenetic landscapes are hallmarks of many complex human diseases, yet, it
is often challenging to assess the underlying mechanisms and causal link with clinical …
is often challenging to assess the underlying mechanisms and causal link with clinical …
[HTML][HTML] AutoMeDIP-seq: a high-throughput, whole genome, DNA methylation assay
LM Butcher, S Beck - Methods, 2010 - Elsevier
DNA methylation is an epigenetic mark linking DNA sequence and transcription regulation,
and therefore plays an important role in phenotypic plasticity. The ideal whole genome …
and therefore plays an important role in phenotypic plasticity. The ideal whole genome …
Comparison of methyl-DNA immunoprecipitation (MeDIP) and methyl-CpG binding domain (MBD) protein capture for genome-wide DNA methylation analysis reveal …
DNA methylation primarily occurs at CpG dinucleotides in mammals and is a common
epigenetic mark that plays a critical role in the regulation of gene expression. Profiling DNA …
epigenetic mark that plays a critical role in the regulation of gene expression. Profiling DNA …
Genomic distribution and inter-sample variation of non-CpG methylation across human cell types
DNA methylation plays an important role in development and disease. The primary sites of
DNA methylation in vertebrates are cytosines in the CpG dinucleotide context, which …
DNA methylation in vertebrates are cytosines in the CpG dinucleotide context, which …
Comprehensive DNA methylation analysis of human peripheral blood leukocytes and lymphoblastoid cell lines
DNA methylation is involved in development and in human diseases. Genomic DNA derived
from lymphoblastoid cell lines (LCLs) is commonly used to study DNA methylation. There …
from lymphoblastoid cell lines (LCLs) is commonly used to study DNA methylation. There …
An integrated-omics analysis of the epigenetic landscape of gene expression in human blood cells
EM Kennedy, GN Goehring, MH Nichols, C Robins… - BMC genomics, 2018 - Springer
Background Gene expression can be influenced by DNA methylation 1) distally, at
regulatory elements such as enhancers, as well as 2) proximally, at promoters. Our current …
regulatory elements such as enhancers, as well as 2) proximally, at promoters. Our current …
Genome-wide genetic variations are highly correlated with proximal DNA methylation patterns
5-methyl-cytosines at CpG sites frequently mutate into thymines, accounting for a large
proportion of spontaneous point mutations. The repair system would leave substantial …
proportion of spontaneous point mutations. The repair system would leave substantial …
Extensive sequence-influenced DNA methylation polymorphism in the human genome
A Hellman, A Chess - Epigenetics & chromatin, 2010 - Springer
Background Epigenetic polymorphisms are a potential source of human diversity, but their
frequency and relationship to genetic polymorphisms are unclear. DNA methylation, an …
frequency and relationship to genetic polymorphisms are unclear. DNA methylation, an …
Quantifying the role of transcript levels in mediating DNA methylation effects on complex traits and diseases
High-dimensional omics datasets provide valuable resources to determine the causal role of
molecular traits in mediating the path from genotype to phenotype. Making use of molecular …
molecular traits in mediating the path from genotype to phenotype. Making use of molecular …