Developmentally linked human DNA hypermethylation is associated with down-modulation, repression, and upregulation of transcription

C Baribault, KC Ehrlich, VKC Ponnaluri, S Pradhan… - Epigenetics, 2018 - Taylor & Francis
ABSTRACT DNA methylation can affect tissue-specific gene transcription in ways that are
difficult to discern from studies focused on genome-wide analyses of differentially …

Cross-tissue patterns of DNA hypomethylation reveal genetically distinct histories of cell development

TJ Scott, TJ Hansen, E McArthur, E Hodges - BMC genomics, 2023 - Springer
Background Establishment of DNA methylation (DNAme) patterns is essential for balanced
multi-lineage cellular differentiation, but exactly how these patterns drive cellular …

Characterization of tissue-specific differential DNA methylation suggests distinct modes of positive and negative gene expression regulation

J Wan, VF Oliver, G Wang, H Zhu, DJ Zack, SL Merbs… - BMC genomics, 2015 - Springer
Background DNA methylation plays an important role in regulating gene expression during
many biological processes. However, the mechanism of DNA-methylation-dependent gene …

Association of 5-hydroxymethylation and 5-methylation of DNA cytosine with tissue-specific gene expression

VKC Ponnaluri, KC Ehrlich, G Zhang, M Lacey… - Epigenetics, 2017 - Taylor & Francis
Differentially methylated or hydroxymethylated regions (DMRs) in mammalian DNA are often
associated with tissue-specific gene expression but the functional relationships are still …

Tissue-specific DNA methylation is conserved across human, mouse, and rat, and driven by primary sequence conservation

J Zhou, RL Sears, X Xing, B Zhang, D Li… - BMC genomics, 2017 - Springer
Background Uncovering mechanisms of epigenome evolution is an essential step towards
understanding the evolution of different cellular phenotypes. While studies have confirmed …

DNA demethylation pathways: recent insights

C Li - Genetics & Epigenetics, 2013 - journals.sagepub.com
DNA methylation is a major epigenetic regulatory mechanism for gene expression and cell
differentiation. Until recently, it was still unclear how unmethylated regions in mammalian …

DNA methylation and differentiation: silencing, upregulation and modulation of gene expression

M Ehrlich, M Lacey - Epigenomics, 2013 - Taylor & Francis
Differentiation-related DNA methylation is receiving increasing attention, partly owing to
new, whole-genome analyses. These revealed that cell type-specific differential methylation …

Longitudinal genome-wide DNA methylation analysis uncovers persistent early-life DNA methylation changes

RF Pérez, P Santamarina, JR Tejedor… - Journal of translational …, 2019 - Springer
Background Early life is a period of drastic epigenetic remodeling in which the epigenome is
especially sensitive to extrinsic and intrinsic influence. However, the epigenome-wide …

Genome-wide survey reveals dynamic widespread tissue-specific changes in DNA methylation during development

P Liang, F Song, S Ghosh, E Morien, M Qin… - BMC genomics, 2011 - Springer
Background Changes in DNA methylation in the mammalian genome during development
are frequent events and play major roles regulating gene expression and other …

Epigenetics: differential DNA methylation in mammalian somatic tissues

H Nagase, S Ghosh - The FEBS journal, 2008 - Wiley Online Library
Epigenetics refers to heritable phenotypic alterations in the absence of DNA sequence
changes, and DNA methylation is one of the extensively studied epigenetic alterations. DNA …