Distinct DNA methylation patterns characterize differentiated human embryonic stem cells and developing human fetal liver

AL Brunner, DS Johnson, SW Kim, A Valouev… - Genome …, 2009 - genome.cshlp.org
To investigate the role of DNA methylation during human development, we developed
Methyl-seq, a method that assays DNA methylation at more than 90,000 regions throughout …

Dynamic changes in the human methylome during differentiation

L Laurent, E Wong, G Li, T Huynh, A Tsirigos… - Genome …, 2010 - genome.cshlp.org
DNA methylation is a critical epigenetic regulator in mammalian development. Here, we
present a whole-genome comparative view of DNA methylation using bisulfite sequencing of …

[HTML][HTML] A comparative analysis of DNA methylation across human embryonic stem cell lines

PY Chen, S Feng, JWJ Joo, SE Jacobsen, M Pellegrini - Genome biology, 2011 - Springer
Background We performed a comparative analysis of the genome-wide DNA methylation
profiles from three human embryonic stem cell (HESC) lines. It had previously been shown …

Computational analysis of genome-wide DNA methylation during the differentiation of human embryonic stem cells along the endodermal lineage

L Chavez, J Jozefczuk, C Grimm, J Dietrich… - Genome …, 2010 - genome.cshlp.org
The generation of genome-wide data derived from methylated DNA immunoprecipitation
followed by sequencing (MeDIP-seq) has become a major tool for epigenetic studies in …

Temporal uncoupling of the DNA methylome and transcriptional repression during embryogenesis

O Bogdanović, SW Long, SJ van Heeringen… - Genome …, 2011 - genome.cshlp.org
DNA methylation is a tightly regulated epigenetic mark associated with transcriptional
repression. Next-generation sequencing of purified methylated DNA obtained from early …

[HTML][HTML] Spatiotemporal DNA methylome dynamics of the developing mouse fetus

Y He, M Hariharan, DU Gorkin, DE Dickel, C Luo… - Nature, 2020 - nature.com
Cytosine DNA methylation is essential for mammalian development but understanding of its
spatiotemporal distribution in the developing embryo remains limited,. Here, as part of the …

The dynamics of DNA methylation fidelity during mouse embryonic stem cell self-renewal and differentiation

L Zhao, M Sun, Z Li, X Bai, M Yu, M Wang… - Genome …, 2014 - genome.cshlp.org
The faithful transmission of DNA methylation patterns through cell divisions is essential for
the daughter cells to retain a proper cell identity. To achieve a comprehensive assessment …

[HTML][HTML] DNA methylation landscapes of human fetal development

RC Slieker, MS Roost, L van Iperen… - PLoS …, 2015 - journals.plos.org
Remodelling the methylome is a hallmark of mammalian development and cell
differentiation. However, current knowledge of DNA methylation dynamics in human tissue …

Epigenomic profiling indicates a role for DNA methylation in early postnatal liver development

RA Waterland, R Kellermayer… - Human molecular …, 2009 - academic.oup.com
The question of whether DNA methylation contributes to the stabilization of gene expression
patterns in differentiated mammalian tissues remains controversial. Using genome-wide …

[HTML][HTML] DNA methylation dynamics during intestinal stem cell differentiation reveals enhancers driving gene expression in the villus

LTJ Kaaij, M van de Wetering, F Fang, B Decato… - Genome biology, 2013 - Springer
Background DNA methylation is of pivotal importance during development. Previous
genome-wide studies identified numerous differentially methylated regions upon …