Deep sequencing and de novo assembly of the mouse oocyte transcriptome define the contribution of transcription to the DNA methylation landscape

L Veselovska, SA Smallwood, H Saadeh, KR Stewart… - Genome biology, 2015 - Springer
Background Previously, a role was demonstrated for transcription in the acquisition of DNA
methylation at imprinted control regions in oocytes. Definition of the oocyte DNA methylome …

Dynamic regulation of DNA methylation during mammalian development

S Guibert, T Forné, M Weber - Epigenomics, 2009 - Taylor & Francis
DNA methylation occurs on cytosines, is catalyzed by DNA methyltransferases (DNMTs),
and is present at high levels in all vertebrates. DNA methylation plays essential roles in …

Epigenetic features in the oyster Crassostrea gigas suggestive of functionally relevant promoter DNA methylation in invertebrates

G Rivière - Frontiers in physiology, 2014 - frontiersin.org
DNA methylation is evolutionarily conserved. Vertebrates exhibit high, widespread DNA
methylation whereas invertebrate genomes are less methylated, predominantly within gene …

Loss of DNA methylation in zebrafish embryos activates retrotransposons to trigger antiviral signaling

Y Chernyavskaya, R Mudbhary, C Zhang… - …, 2017 - journals.biologists.com
Complex cytoplasmic nucleotide-sensing mechanisms can recognize foreign DNA based on
a lack of methylation and initiate an immune response to clear the infection. Zebrafish …

The maternal to zygotic transition regulates genome-wide heterochromatin establishment in the zebrafish embryo

K Laue, S Rajshekar, AJ Courtney, ZA Lewis… - Nature …, 2019 - nature.com
The segregation of eukaryotic genomes into euchromatin and heterochromatin represents a
fundamental and poorly understood process. Here, we demonstrate that genome-wide …

The evolution of invertebrate gene body methylation

S Sarda, J Zeng, BG Hunt, SV Yi - Molecular biology and …, 2012 - academic.oup.com
DNA methylation of transcription units (gene bodies) occurs in the genomes of many animal
and plant species. Phylogenetic persistence of gene body methylation implies biological …

De novo DNA methylation during monkey pre-implantation embryogenesis

F Gao, Y Niu, YE Sun, H Lu, Y Chen, S Li, Y Kang… - Cell research, 2017 - nature.com
Critical epigenetic regulation of primate embryogenesis entails DNA methylome changes.
Here we report genome-wide composition, patterning, and stage-specific dynamics of DNA …

Absence of global genomic cytosine methylation pattern erasure during medaka (Oryzias latipes) early embryo development

RB Walter, HY Li, GW Intano, S Kazianis… - … and Physiology Part B …, 2002 - Elsevier
Two techniques were used to analyze global genomic 5-methyl cytosine methylation at
CCGG sites of medaka embryo DNA. DNA was labeled by incorporation of microinjected …

Zebrafish as a model to study the role of DNA methylation in environmental toxicology

JH Kamstra, P Aleström, JM Kooter, J Legler - Environmental Science and …, 2015 - Springer
Environmental epigenetics is a rapidly growing field which studies the effects of
environmental factors such as nutrition, stress, and exposure to compounds on epigenetic …

DNA methyltransferases and stress-related genes expression in zebrafish larvae after exposure to heat and copper during reprogramming of DNA methylation

J Dorts, E Falisse, E Schoofs, E Flamion… - Scientific reports, 2016 - nature.com
DNA methylation, a well-studied epigenetic mark, is important for gene regulation in
adulthood and for development. Using genetic and epigenetic approaches, the present …