CpG methylation is targeted to transcription units in an invertebrate genome

MM Suzuki, ARW Kerr, D De Sousa, A Bird - Genome research, 2007 - genome.cshlp.org
DNA is methylated at the dinucleotide CpG in genomes of a wide range of plants and
animals. Among animals, variable patterns of genomic CpG methylation have been …

Comparative methylomics reveals gene-body H3K36me3 in Drosophila predicts DNA methylation and CpG landscapes in other invertebrates

L Nanty, G Carbajosa, GA Heap, F Ratnieks… - Genome …, 2011 - genome.cshlp.org
In invertebrates that harbor functional DNA methylation enzymatic machinery, gene-bodies
are the primary targets for CpG methylation. However, virtually all other aspects of …

Protection of CpG islands from DNA methylation is DNA-encoded and evolutionarily conserved

HK Long, HW King, RK Patient, DT Odom… - Nucleic Acids …, 2016 - academic.oup.com
DNA methylation is a repressive epigenetic modification that covers vertebrate genomes.
Regions known as CpG islands (CGIs), which are refractory to DNA methylation, are often …

Genome-wide evolutionary analysis of eukaryotic DNA methylation

A Zemach, IE McDaniel, P Silva, D Zilberman - Science, 2010 - science.org
Eukaryotic cytosine methylation represses transcription but also occurs in the bodies of
active genes, and the extent of methylation biology conservation is unclear. We quantified …

GC skew is a conserved property of unmethylated CpG island promoters across vertebrates

SR Hartono, IF Korf, F Chédin - Nucleic acids research, 2015 - academic.oup.com
GC skew is a measure of the strand asymmetry in the distribution of guanines and cytosines.
GC skew favors R-loops, a type of three stranded nucleic acid structures that form upon …

Conservation and divergence of methylation patterning in plants and animals

S Feng, SJ Cokus, X Zhang, PY Chen… - Proceedings of the …, 2010 - National Acad Sciences
Cytosine DNA methylation is a heritable epigenetic mark present in many eukaryotic
organisms. Although DNA methylation likely has a conserved role in gene silencing, the …

Conservation and divergence in eukaryotic DNA methylation

T Lee, J Zhai, BC Meyers - Proceedings of the National …, 2010 - National Acad Sciences
Cytosine methylation is a com-mon DNA modification found in most eukaryotic organisms
including plants, animals, and fungi (1, 2). The addition of a methyl group to cytosine …

Genomic patterns and context specific interpretation of DNA methylation

T Baubec, D Schübeler - Current opinion in genetics & development, 2014 - Elsevier
Methylation of CpG dinucleotides is a reversible modification of DNA that is highly prevalent
throughout mammalian genomes. Recent advances generated genomic DNA methylation …

Genomics of CpG methylation in developing and developed zebrafish

DM McGaughey, HO Abaan, RM Miller… - G3: Genes …, 2014 - academic.oup.com
DNA methylation is a dynamic process through which specific chromatin modifications can
be stably transmitted from parent to daughter cells. A large body of work has suggested that …

Genome-wide and single-base resolution DNA methylomes of the Pacific oyster Crassostrea gigas provide insight into the evolution of invertebrate CpG methylation

X Wang, Q Li, J Lian, L Li, L Jin, H Cai, F Xu, H Qi… - BMC genomics, 2014 - Springer
Background Studies of DNA methylomes in a wide range of eukaryotes have revealed both
conserved and divergent characteristics of DNA methylation among phylogenetic groups …