Comparative pan-cancer DNA methylation analysis reveals cancer common and specific patterns

X Yang, L Gao, S Zhang - Briefings in bioinformatics, 2017 - academic.oup.com
Abnormal DNA methylation is an important epigenetic regulator involving tumorigenesis.
Deciphering cancer common and specific DNA methylation patterns is essential for us to …

Methods for genome-wide DNA methylation analysis in human cancer

S Fan, W Chi - Briefings in Functional Genomics, 2016 - academic.oup.com
Aberrant DNA methylation is considered to be one of the most common hallmarks of cancer.
Several recent advances in assessing the DNA methylome provide great promise for …

[HTML][HTML] The identification of specific methylation patterns across different cancers

C Zhang, H Zhao, J Li, H Liu, F Wang, Y Wei, J Su… - PloS one, 2015 - journals.plos.org
Abnormal DNA methylation is known as playing an important role in the tumorgenesis. It is
helpful for distinguishing the specificity of diagnosis and therapeutic targets for cancers …

[HTML][HTML] Pancancer analysis of DNA methylation-driven genes using MethylMix

O Gevaert, R Tibshirani, SK Plevritis - Genome biology, 2015 - Springer
Aberrant DNA methylation is an important mechanism that contributes to oncogenesis. Yet,
few algorithms exist that exploit this vast dataset to identify hypo-and hypermethylated genes …

Genome-wide DNA methylation analysis identifies candidate epigenetic markers and drivers of hepatocellular carcinoma

Y Zheng, Q Huang, Z Ding, T Liu, C Xue… - Briefings in …, 2018 - academic.oup.com
The alteration of DNA methylation landscape is a key epigenetic event in cancer. As the
accumulation of large-scale genome-wide DNA methylation data from clinical samples, we …

[HTML][HTML] Pan-cancer analysis of frequent DNA co-methylation patterns reveals consistent epigenetic landscape changes in multiple cancers

J Zhang, K Huang - Bmc Genomics, 2017 - Springer
Background DNA methylation is the major form of epigenetic modifications through which
the cell regulates the gene expression and silencing. There have been extensive studies on …

[HTML][HTML] DNA methylation screening identifies driver epigenetic events of cancer cell survival

DD De Carvalho, S Sharma, JS You, SF Su… - Cancer cell, 2012 - cell.com
Cancer cells typically exhibit aberrant DNA methylation patterns that can drive malignant
transformation. Whether cancer cells are dependent on these abnormal epigenetic …

Integrative analysis identifies potential DNA methylation biomarkers for pan-cancer diagnosis and prognosis

W Ding, G Chen, T Shi - Epigenetics, 2019 - Taylor & Francis
ABSTRACT DNA methylation status is closely associated with diverse diseases, and is
generally more stable than gene expression, thus abnormal DNA methylation could be …

[HTML][HTML] Pan-cancer patterns of DNA methylation

T Witte, C Plass, C Gerhauser - Genome medicine, 2014 - Springer
The comparison of DNA methylation patterns across cancer types (pan-cancer methylome
analyses) has revealed distinct subgroups of tumors that share similar methylation patterns …

DNMIVD: DNA methylation interactive visualization database

W Ding, J Chen, G Feng, G Chen, J Wu… - Nucleic acids …, 2020 - academic.oup.com
Aberrant DNA methylation plays an important role in cancer progression. However, no
resource has been available that comprehensively provides DNA methylation-based …