High-resolution mapping of DNA methylation in human genome using oligonucleotide tiling array

H Hayashi, G Nagae, S Tsutsumi, K Kaneshiro… - Human genetics, 2007 - Springer
DNA methylation is an epigenetic mark crucial in regulation of gene expression. Aberrant
DNA methylation causes silencing of tumor suppressor genes and promotes chromosomal …

[HTML][HTML] Genome-wide profiling of DNA methylation in human cancer cells

K Ogoshi, S Hashimoto, Y Nakatani, W Qu, K Oshima… - Genomics, 2011 - Elsevier
Global changes in DNA methylation correlate with altered gene expression and genomic
instability in cancer. We have developed a methylation-specific digital sequencing (MSDS) …

Array-based analysis of genomic DNA methylation patterns of the tumour suppressor gene p16 INK4A promoter in colon carcinoma …

C Mund, V Beier, P Bewerunge, M Dahms… - Nucleic acids …, 2005 - academic.oup.com
Aberrant DNA methylation at CpG dinucleotides can result in epigenetic silencing of tumour
suppressor genes and represents one of the earliest events in tumourigenesis. To date …

Comprehensive DNA methylation profiling in a human cancer genome identifies novel epigenetic targets

JM Ordway, JA Bedell, RW Citek, A Nunberg… - …, 2006 - academic.oup.com
Using a unique microarray platform for cytosine methylation profiling, the DNA methylation
landscape of the human genome was monitored at more than 21 000 sites, including 79% of …

Methylome profiling of cancer cells by amplification of inter-methylated sites (AIMS)

J Frigola, M Ribas, RA Risques… - Nucleic acids …, 2002 - academic.oup.com
Alterations of the DNA methylation pattern have been related to generalized chromosomal
disruption and inactivation of multiple tumor suppressor genes in neoplasia. To screen for …

Oligonucleotide‐based microarray for DNA methylation analysis: principles and applications

H Shi, S Maier, I Nimmrich, PS Yan… - Journal of cellular …, 2003 - Wiley Online Library
Gene silencing via promoter CpG island hypermethylation offers tumor cells growth
advantages. This epigenetic event is pharmacologically reversible, and uncovering a unique …

High-throughput methylation profiling by MCA coupled to CpG island microarray

MRH Estécio, PS Yan, AEK Ibrahim, CS Tellez… - Genome …, 2007 - genome.cshlp.org
An abnormal pattern of DNA methylation occurs at specific genes in almost all neoplasms.
The lack of high-throughput methods with high specificity and sensitivity to detect changes in …

Methylation analysis by DNA immunoprecipitation (MeDIP)

EA Vucic, IM Wilson, JM Campbell, WL Lam - Microarray Analysis of the …, 2009 - Springer
Alteration in epigenetic regulation of gene expression is a common event in human cancer
and developmental disease. CpG island hypermethylation and consequent gene silencing …

Tackling the methylome: recent methodological advances in genome-wide methylation profiling

MRH Estécio, JPJ Issa - Genome medicine, 2009 - Springer
DNA methylation of promoter CpG islands is strongly associated with gene silencing and is
known as a frequent cause of loss of expression of tumor suppressor genes, as well as other …

High definition profiling of mammalian DNA methylation by array capture and single molecule bisulfite sequencing

E Hodges, AD Smith, J Kendall, Z Xuan, K Ravi… - Genome …, 2009 - genome.cshlp.org
DNA methylation stabilizes developmentally programmed gene expression states. Aberrant
methylation is associated with disease progression and is a common feature of cancer …