Association of tissue-specific differentially methylated regions (TDMs) with differential gene expression

F Song, JF Smith, MT Kimura… - Proceedings of the …, 2005 - National Acad Sciences
Early studies proposed that DNA methylation could have a role in regulating gene
expression during development [Riggs, AD (1975) Cytogenet. Cell Genet. 14, 9–25] …

[HTML][HTML] Analysis of tissue-specific differentially methylated regions (TDMs) in humans

E Kitamura, J Igarashi, A Morohashi, N Hida, T Oinuma… - Genomics, 2007 - Elsevier
Alterations in DNA methylation have been implicated in mammalian development. Hence,
the identification of tissue-specific differentially methylated regions (TDMs) is indispensable …

[HTML][HTML] Tissue specific differentially methylated regions (TDMR): Changes in DNA methylation during development

F Song, S Mahmood, S Ghosh, P Liang, DJ Smiraglia… - Genomics, 2009 - Elsevier
Tissue specific differentially methylated regions (TDMRs) were identified and localized in the
mouse genome using second generation virtual RLGS (vRLGS). Sequenom MassARRAY …

DNA methylation profiles of CpG islands for cellular differentiation and development in mammals

K Shiota - Cytogenetic and genome research, 2004 - karger.com
DNA methylation has been implicated in mammalian development. Transcription units
contain CpG islands, but expression of CpG island associated genes in normal tissues was …

[HTML][HTML] Identification and systematic annotation of tissue-specific differentially methylated regions using the Illumina 450k array

RC Slieker, SD Bos, JJ Goeman, JVMG Bovée… - Epigenetics & …, 2013 - Springer
Background DNA methylation has been recognized as a key mechanism in cell
differentiation. Various studies have compared tissues to characterize epigenetically …

DNA methylation profile of tissue-dependent and differentially methylated regions (T-DMRs) in mouse promoter regions demonstrating tissue-specific gene expression

S Yagi, K Hirabayashi, S Sato, W Li… - Genome …, 2008 - genome.cshlp.org
DNA methylation constitutes an important epigenetic regulation mechanism in many
eukaryotes, although the extent of DNA methylation in the regulation of gene expression in …

[HTML][HTML] Characterization of tissue-specific differential DNA methylation suggests distinct modes of positive and negative gene expression regulation

J Wan, VF Oliver, G Wang, H Zhu, DJ Zack, SL Merbs… - BMC genomics, 2015 - Springer
Background DNA methylation plays an important role in regulating gene expression during
many biological processes. However, the mechanism of DNA-methylation-dependent gene …

[HTML][HTML] Genome-wide survey reveals dynamic widespread tissue-specific changes in DNA methylation during development

P Liang, F Song, S Ghosh, E Morien, M Qin… - BMC genomics, 2011 - Springer
Background Changes in DNA methylation in the mammalian genome during development
are frequent events and play major roles regulating gene expression and other …

Chromosome-wide and promoter-specific analyses identify sites of differential DNA methylation in normal and transformed human cells

M Weber, JJ Davies, D Wittig, EJ Oakeley, M Haase… - Nature …, 2005 - nature.com
Cytosine methylation is required for mammalian development and is often perturbed in
human cancer. To determine how this epigenetic modification is distributed in the genomes …

Variations in DNA methylation patterns during the cell cycle of HeLa cells

SE Brown, MF Fraga, ICG Weaver, M Berdasco… - Epigenetics, 2007 - Taylor & Francis
DNA methylation has been viewed as a stable component of the epigenome, which is
established during development and fixed thereafter. We show here using nearest neighbor …