Systems-level dynamic analyses of fate change in murine embryonic stem cells

R Lu, F Markowetz, RD Unwin, JT Leek, EM Airoldi… - Nature, 2009 - nature.com
Molecular regulation of embryonic stem cell (ESC) fate involves a coordinated interaction
between epigenetic,,,, transcriptional,,,,, and translational, mechanisms. It is unclear how …

Transcription factor binding dynamics during human ES cell differentiation

AM Tsankov, H Gu, V Akopian, MJ Ziller, J Donaghey… - Nature, 2015 - nature.com
Pluripotent stem cells provide a powerful system to dissect the underlying molecular
dynamics that regulate cell fate changes during mammalian development. Here we report …

The cis-regulatory dynamics of embryonic development at single-cell resolution

DA Cusanovich, JP Reddington, DA Garfield, RM Daza… - Nature, 2018 - nature.com
Understanding how gene regulatory networks control the progressive restriction of cell fates
is a long-standing challenge. Recent advances in measuring gene expression in single cells …

Nanog-dependent feedback loops regulate murine embryonic stem cell heterogeneity

BD MacArthur, A Sevilla, M Lenz, FJ Müller… - Nature cell …, 2012 - nature.com
A number of key regulators of mouse embryonic stem (ES) cell identity, including the
transcription factor Nanog, show strong expression fluctuations at the single-cell level. The …

Chromatin connectivity maps reveal dynamic promoter–enhancer long-range associations

Y Zhang, CH Wong, RY Birnbaum, G Li, R Favaro… - Nature, 2013 - nature.com
In multicellular organisms, transcription regulation is one of the central mechanisms
modelling lineage differentiation and cell-fate determination. Transcription requires dynamic …

NANOG alone induces germ cells in primed epiblast in vitro by activation of enhancers

K Murakami, U Günesdogan, JJ Zylicz, WWC Tang… - Nature, 2016 - nature.com
Nanog, a core pluripotency factor in the inner cell mass of blastocysts, is also expressed in
unipotent primordial germ cells (PGCs) in mice, where its precise role is yet unclear,,. We …

Chromatin architecture reorganization during stem cell differentiation

JR Dixon, I Jung, S Selvaraj, Y Shen… - Nature, 2015 - nature.com
Higher-order chromatin structure is emerging as an important regulator of gene expression.
Although dynamic chromatin structures have been identified in the genome, the full scope of …

A protein interaction network for pluripotency of embryonic stem cells

J Wang, S Rao, J Chu, X Shen, DN Levasseur… - Nature, 2006 - nature.com
Embryonic stem (ES) cells are pluripotent, and of therapeutic potential in regenerative
medicine,. Understanding pluripotency at the molecular level should illuminate fundamental …

The single-cell transcriptional landscape of mammalian organogenesis

J Cao, M Spielmann, X Qiu, X Huang, DM Ibrahim… - Nature, 2019 - nature.com
Mammalian organogenesis is a remarkable process. Within a short timeframe, the cells of
the three germ layers transform into an embryo that includes most of the major internal and …

Molecular recording of mammalian embryogenesis

MM Chan, ZD Smith, S Grosswendt, H Kretzmer… - Nature, 2019 - nature.com
Ontogeny describes the emergence of complex multicellular organisms from single
totipotent cells. This field is particularly challenging in mammals, owing to the indeterminate …