Human DNA methylomes at base resolution show widespread epigenomic differences

R Lister, M Pelizzola, RH Dowen, RD Hawkins, G Hon… - nature, 2009 - nature.com
DNA cytosine methylation is a central epigenetic modification that has essential roles in
cellular processes including genome regulation, development and disease. Here we …

Spatiotemporal DNA methylome dynamics of the developing mouse fetus

Y He, M Hariharan, DU Gorkin, DE Dickel, C Luo… - Nature, 2020 - nature.com
Cytosine DNA methylation is essential for mammalian development but understanding of its
spatiotemporal distribution in the developing embryo remains limited,. Here, as part of the …

Genome-scale DNA methylation maps of pluripotent and differentiated cells

A Meissner, TS Mikkelsen, H Gu, M Wernig, J Hanna… - Nature, 2008 - nature.com
DNA methylation is essential for normal development,, and has been implicated in many
pathologies including cancer,. Our knowledge about the genome-wide distribution of DNA …

DNA-binding factors shape the mouse methylome at distal regulatory regions

MB Stadler, R Murr, L Burger, R Ivanek, F Lienert… - Nature, 2011 - nature.com
Methylation of cytosines is an essential epigenetic modification in mammalian genomes, yet
the rules that govern methylation patterns remain largely elusive. To gain insights into this …

A DNA methylation atlas of normal human cell types

N Loyfer, J Magenheim, A Peretz, G Cann, J Bredno… - Nature, 2023 - nature.com
DNA methylation is a fundamental epigenetic mark that governs gene expression and
chromatin organization, thus providing a window into cellular identity and developmental …

The DNA methylation landscape of human early embryos

H Guo, P Zhu, L Yan, R Li, B Hu, Y Lian, J Yan, X Ren… - Nature, 2014 - nature.com
DNA methylation is a crucial element in the epigenetic regulation of mammalian embryonic
development,,,,. However, its dynamic patterns have not been analysed at the genome scale …

Human body epigenome maps reveal noncanonical DNA methylation variation

MD Schultz, Y He, JW Whitaker, M Hariharan… - Nature, 2015 - nature.com
Understanding the diversity of human tissues is fundamental to disease and requires linking
genetic information, which is identical in most of an individual's cells, with epigenetic …

Parallel single-cell sequencing links transcriptional and epigenetic heterogeneity

C Angermueller, SJ Clark, HJ Lee, IC Macaulay… - Nature …, 2016 - nature.com
We report scM&T-seq, a method for parallel single-cell genome-wide methylome and
transcriptome sequencing that allows for the discovery of associations between …

DNA methylation dynamics of the human preimplantation embryo

ZD Smith, MM Chan, KC Humm, R Karnik… - Nature, 2014 - nature.com
In mammals, cytosine methylation is predominantly restricted to CpG dinucleotides and
stably distributed across the genome, with local, cell-type-specific regulation directed by …

Dynamic changes in the human methylome during differentiation

L Laurent, E Wong, G Li, T Huynh, A Tsirigos… - Genome …, 2010 - genome.cshlp.org
DNA methylation is a critical epigenetic regulator in mammalian development. Here, we
present a whole-genome comparative view of DNA methylation using bisulfite sequencing of …