A coherent approach for analysis of the Illumina HumanMethylation450 BeadChip improves data quality and performance in epigenome-wide association studies
B Lehne, AW Drong, M Loh, W Zhang, WR Scott… - Genome biology, 2015 - Springer
DNA methylation plays a fundamental role in the regulation of the genome, but the optimal
strategy for analysis of genome-wide DNA methylation data remains to be determined. We …
strategy for analysis of genome-wide DNA methylation data remains to be determined. We …
RELIC: a novel dye-bias correction method for Illumina Methylation BeadChip
Abstract Background The Illumina Infinium HumanMethylation450 BeadChip and its
successor, Infinium MethylationEPIC BeadChip, have been extensively utilized in …
successor, Infinium MethylationEPIC BeadChip, have been extensively utilized in …
[HTML][HTML] Identification of polymorphic and off-target probe binding sites on the Illumina Infinium MethylationEPIC BeadChip
Genome-wide analysis of DNA methylation has now become a relatively inexpensive
technique thanks to array-based methylation profiling technologies. The recently developed …
technique thanks to array-based methylation profiling technologies. The recently developed …
[HTML][HTML] Analysis pipelines and packages for Infinium HumanMethylation450 BeadChip (450k) data
TJ Morris, S Beck - Methods, 2015 - Elsevier
Abstract The Illumina HumanMethylation450 BeadChip has become a popular platform for
interrogating DNA methylation in epigenome-wide association studies (EWAS) and related …
interrogating DNA methylation in epigenome-wide association studies (EWAS) and related …
Critical evaluation of the Illumina MethylationEPIC BeadChip microarray for whole-genome DNA methylation profiling
Background In recent years the Illumina HumanMethylation450 (HM450) BeadChip has
provided a user-friendly platform to profile DNA methylation in human samples. However …
provided a user-friendly platform to profile DNA methylation in human samples. However …
RCP: a novel probe design bias correction method for Illumina Methylation BeadChip
Abstract Motivation: The Illumina HumanMethylation450 BeadChip has been extensively
utilized in epigenome-wide association studies. This array and its successor, the …
utilized in epigenome-wide association studies. This array and its successor, the …
Additional annotation enhances potential for biologically-relevant analysis of the Illumina Infinium HumanMethylation450 BeadChip array
Background Measurement of genome-wide DNA methylation (DNAm) has become an
important avenue for investigating potential physiologically-relevant epigenetic changes …
important avenue for investigating potential physiologically-relevant epigenetic changes …
ENmix: a novel background correction method for Illumina HumanMethylation450 BeadChip
Abstract The Illumina HumanMethylation450 BeadChip is increasingly utilized in epigenome-
wide association studies, however, this array-based measurement of DNA methylation is …
wide association studies, however, this array-based measurement of DNA methylation is …
missMethyl: an R package for analyzing data from Illumina's HumanMethylation450 platform
DNA methylation is one of the most commonly studied epigenetic modifications due to its
role in both disease and development. The Illumina HumanMethylation450 BeadChip is a …
role in both disease and development. The Illumina HumanMethylation450 BeadChip is a …
Reducing the risk of false discovery enabling identification of biologically significant genome-wide methylation status using the HumanMethylation450 array
Abstract Background The Illumina HumanMethylation450 BeadChip (HM450K) measures
the DNA methylation of 485,512 CpGs in the human genome. The technology relies on …
the DNA methylation of 485,512 CpGs in the human genome. The technology relies on …