An evaluation of analysis pipelines for DNA methylation profiling using the Illumina HumanMethylation450 BeadChip platform
The proper identification of differentially methylated CpGs is central in most epigenetic
studies. The Illumina HumanMethylation450 BeadChip is widely used to quantify DNA …
studies. The Illumina HumanMethylation450 BeadChip is widely used to quantify DNA …
Complete Pipeline for Infinium® Human Methylation 450K BeadChip Data Processing Using Subset Quantile Normalization for Accurate DNA Methylation Estimation
N Touleimat, J Tost - Epigenomics, 2012 - Taylor & Francis
Background: Huge progress has been made in the development of array-or sequencing-
based technologies for DNA methylation analysis. The Illumina Infinium® Human …
based technologies for DNA methylation analysis. The Illumina Infinium® Human …
missMethyl: an R package for analyzing data from Illumina's HumanMethylation450 platform
DNA methylation is one of the most commonly studied epigenetic modifications due to its
role in both disease and development. The Illumina HumanMethylation450 BeadChip is a …
role in both disease and development. The Illumina HumanMethylation450 BeadChip is a …
A data-driven approach to preprocessing Illumina 450K methylation array data
Background As the most stable and experimentally accessible epigenetic mark, DNA
methylation is of great interest to the research community. The landscape of DNA …
methylation is of great interest to the research community. The landscape of DNA …
The ENmix DNA methylation analysis pipeline for Illumina BeadChip and comparisons with seven other preprocessing pipelines
Background Illumina DNA methylation arrays are high-throughput platforms for cost-effective
genome-wide profiling of individual CpGs. Experimental and technical factors introduce …
genome-wide profiling of individual CpGs. Experimental and technical factors introduce …
Critical evaluation of the Illumina MethylationEPIC BeadChip microarray for whole-genome DNA methylation profiling
Background In recent years the Illumina HumanMethylation450 (HM450) BeadChip has
provided a user-friendly platform to profile DNA methylation in human samples. However …
provided a user-friendly platform to profile DNA methylation in human samples. However …
A framework for analyzing DNA methylation data from Illumina Infinium HumanMethylation450 BeadChip
Z Wang, XL Wu, Y Wang - BMC bioinformatics, 2018 - Springer
Background DNA methylation has been identified to be widely associated to complex
diseases. Among biological platforms to profile DNA methylation in human, the Illumina …
diseases. Among biological platforms to profile DNA methylation in human, the Illumina …
Validation of a DNA methylation microarray for 850,000 CpG sites of the human genome enriched in enhancer sequences
S Moran, C Arribas, M Esteller - Epigenomics, 2016 - Taylor & Francis
Aim: DNA methylation is the best known epigenetic mark. Cancer and other pathologies
show an altered DNA methylome. However, delivering complete DNA methylation maps is …
show an altered DNA methylome. However, delivering complete DNA methylation maps is …
SWAN: Subset-quantile within array normalization for illumina infinium HumanMethylation450 BeadChips
DNA methylation is the most widely studied epigenetic mark and is known to be essential to
normal development and frequently disrupted in disease. The Illumina …
normal development and frequently disrupted in disease. The Illumina …
ChAMP: updated methylation analysis pipeline for Illumina BeadChips
Abstract Summary The Illumina Infinium HumanMethylationEPIC BeadChip is the new
platform for high-throughput DNA methylation analysis, effectively doubling the coverage …
platform for high-throughput DNA methylation analysis, effectively doubling the coverage …