The application of next generation sequencing in DNA methylation analysis

Y Zhang, A Jeltsch - Genes, 2010 - mdpi.com
DNA methylation is a major form of epigenetic modification and plays essential roles in
physiology and disease processes. In the human genome, about 80% of cytosines in the 56 …

DNA methylation detection: bisulfite genomic sequencing analysis

Y Li, TO Tollefsbol - Epigenetics protocols, 2011 - Springer
DNA methylation, which most commonly occurs at the C5 position of cytosines within CpG
dinucleotides, plays a pivotal role in many biological procedures such as gene expression …

Determining DNA methylation profiles using sequencing

S Feng, L Rubbi, SE Jacobsen, M Pellegrini - High-throughput next …, 2011 - Springer
Cytosine methylation is an epigenetic mark that has a significant impact on the regulation of
transcription and replication of DNA. DNA methylation patterns are highly conserved across …

Targeted bisulfite sequencing for biomarker discovery

M Morselli, C Farrell, L Rubbi, HL Fehling, R Henkhaus… - Methods, 2021 - Elsevier
Cytosine methylation is one of the best studied epigenetic modifications. In mammals, DNA
methylation patterns vary among cells and is mainly found in the CpG context. DNA …

Comprehensive evaluation of commercial bisulfite-based DNA methylation kits and development of an alternative protocol with improved conversion performance

S Tierling, B Schmitt, J Walter - Genetics & epigenetics, 2018 - journals.sagepub.com
DNA methylation is the most studied epigenetic modification with a wide range of regulatory
functions in mammalian genomes. It almost exclusively resides on CpG dinucleotides and …

Targeted DNA methylation analysis by next-generation sequencing

DR Masser, DR Stanford, WM Freeman - JoVE (Journal of Visualized …, 2015 - jove.com
The role of epigenetic processes in the control of gene expression has been known for a
number of years. DNA methylation at cytosine residues is of particular interest for epigenetic …

Genome‐wide DNA methylation profiling

M Bibikova, JB Fan - Wiley Interdisciplinary Reviews: Systems …, 2010 - Wiley Online Library
DNA methylation plays a critical role in the regulation of gene expression. The ability to
access the methylation status for a large number of genes or the entire genome should …

A summary of the biological processes, disease-associated changes, and clinical applications of DNA methylation

GB Andersen, J Tost - DNA Methylation Protocols, 2018 - Springer
DNA methylation at cytosines followed by guanines, CpGs, forms one of the multiple layers
of epigenetic mechanisms controlling and modulating gene expression through chromatin …

CpGtools: a python package for DNA methylation analysis

T Wei, J Nie, NB Larson, Z Ye, JE Eckel-Passow… - …, 2021 - academic.oup.com
Motivation DNA methylation can be measured at the single CpG level using sodium bisulfite
conversion of genomic DNA followed by sequencing or array hybridization. Many analytic …

Current and emerging technologies for the analysis of the genome-wide and locus-specific DNA methylation patterns

J Tost - DNA Methyltransferases-Role and Function, 2016 - Springer
DNA methylation is the most studied epigenetic modification, and altered DNA methylation
patterns have been identified in cancer and more recently also in many other complex …