MIRA-assisted microarray analysis, a new technology for the determination of DNA methylation patterns, identifies frequent methylation of homeodomain-containing …

T Rauch, H Li, X Wu, GP Pfeifer - Cancer research, 2006 - AACR
We present a straightforward and comprehensive approach for DNA methylation analysis in
mammalian genomes. The methylated-CpG island recovery assay (MIRA), which is based …

The MIRA method for DNA methylation analysis

TA Rauch, GP Pfeifer - DNA methylation: methods and protocols, 2009 - Springer
DNA methylation patterns are often altered in human cancer and aberrant methylation is
considered a hallmark of malignant transformation. Several methods have been developed …

Multiple gene methylation of nonsmall cell lung cancers evaluated with 3‐dimensional microarray

Y Wang, D Zhang, W Zheng, J Luo… - … International Journal of …, 2008 - Wiley Online Library
BACKGROUND Aberrant DNA methylation of the CpG islands for cancer‐related genes is
among the earliest and most frequent alterations in cancer and may be useful for diagnosing …

Microarray analysis of promoter methylation in lung cancers

M Fukasawa, M Kimura, S Morita, K Matsubara… - Journal of human …, 2006 - nature.com
Aberrant DNA methylation is an important event in carcinogenesis. Of the various regions of
a gene that can be methylated in cancers, the promoter is the most important for the …

Homeobox gene methylation in lung cancer studied by genome-wide analysis with a microarray-based methylated CpG island recovery assay

T Rauch, Z Wang, X Zhang, X Zhong… - Proceedings of the …, 2007 - National Acad Sciences
De novo methylation of CpG islands is a common phenomenon in human cancer, but the
mechanisms of cancer-associated DNA methylation are not known. We have used tiling …

DNA methylation patterns in lung carcinomas

GP Pfeifer, TA Rauch - Seminars in cancer biology, 2009 - Elsevier
The genome of epithelial tumors is characterized by numerous chromosomal aberrations,
DNA base sequence changes, and epigenetic abnormalities. The epigenome of cancer cells …

High-throughput methylation profiling by MCA coupled to CpG island microarray

MRH Estécio, PS Yan, AEK Ibrahim, CS Tellez… - Genome …, 2007 - genome.cshlp.org
An abnormal pattern of DNA methylation occurs at specific genes in almost all neoplasms.
The lack of high-throughput methods with high specificity and sensitivity to detect changes in …

Genome-wide CpG island methylation analyses in non-small cell lung cancer patients

G Heller, VN Babinsky, B Ziegler, M Weinzierl… - …, 2013 - academic.oup.com
DNA methylation is part of the epigenetic gene regulation complex, which is relevant for the
pathogenesis of cancer. We performed a genome-wide search for methylated CpG islands …

MBD-isolated Genome Sequencing provides a high-throughput and comprehensive survey of DNA methylation in the human genome

D Serre, BH Lee, AH Ting - Nucleic acids research, 2010 - academic.oup.com
DNA methylation is an epigenetic modification involved in both normal developmental
processes and disease states through the modulation of gene expression and the …

Evidence for an instructive mechanism of de novo methylation in cancer cells

I Keshet, Y Schlesinger, S Farkash, E Rand, M Hecht… - Nature …, 2006 - nature.com
DNA methylation has a role in the regulation of gene expression during normal mammalian
development but can also mediate epigenetic silencing of CpG island genes in cancer and …