A DNA methylation fingerprint of 1628 human samples

AF Fernandez, Y Assenov, JI Martin-Subero… - Genome …, 2012 - genome.cshlp.org
Most of the studies characterizing DNA methylation patterns have been restricted to
particular genomic loci in a limited number of human samples and pathological conditions …

DNA methylome profiling of human tissues identifies global and tissue-specific methylation patterns

K Lokk, V Modhukur, B Rajashekar, K Märtens, R Mägi… - Genome biology, 2014 - Springer
Background DNA epigenetic modifications, such as methylation, are important regulators of
tissue differentiation, contributing to processes of both development and cancer. Profiling the …

Inter-individual variation of DNA methylation and its implications for large-scale epigenome mapping

C Bock, J Walter, M Paulsen… - Nucleic acids research, 2008 - academic.oup.com
Genomic DNA methylation profiles exhibit substantial variation within the human population,
with important functional implications for gene regulation. So far little is known about the …

Validation of a DNA methylation microarray for 450,000 CpG sites in the human genome

J Sandoval, H Heyn, S Moran, J Serra-Musach… - Epigenetics, 2011 - Taylor & Francis
DNA methylation is the most studied epigenetic mark and CpG methylation is central to
many biological processes and human diseases. Since cancer has highlighted the …

Chromatin and sequence features that define the fine and gross structure of genomic methylation patterns

JR Edwards, AH O'Donnell, RA Rollins… - Genome …, 2010 - genome.cshlp.org
Abnormalities of genomic methylation patterns are lethal or cause disease, but the cues that
normally designate CpG dinucleotides for methylation are poorly understood. We have …

Dynamic DNA methylation across diverse human cell lines and tissues

KE Varley, J Gertz, KM Bowling, SL Parker… - Genome …, 2013 - genome.cshlp.org
As studies of DNA methylation increase in scope, it has become evident that methylation has
a complex relationship with gene expression, plays an important role in defining cell types …

Large-scale methylation analysis of human genomic DNA reveals tissue-specific differences between the methylation profiles of genes and pseudogenes

C Grunau, W Hindermann… - Human molecular …, 2000 - academic.oup.com
Cytosine in CpG dinucleotides is frequently found to be methylated in the DNA of higher
eukaryotes and differential methylation has been proposed to be a key element in the …

Mining cancer methylomes: prospects and challenges

C Stirzaker, PC Taberlay, AL Statham, SJ Clark - Trends in Genetics, 2014 - cell.com
There are over 28 million CpG sites in the human genome. Assessing the methylation status
of each of these sites will be required to understand fully the role of DNA methylation in …

Extensive sequence-influenced DNA methylation polymorphism in the human genome

A Hellman, A Chess - Epigenetics & chromatin, 2010 - Springer
Background Epigenetic polymorphisms are a potential source of human diversity, but their
frequency and relationship to genetic polymorphisms are unclear. DNA methylation, an …

Investigating the relationship of DNA methylation with mutation rate and allele frequency in the human genome

J Xia, L Han, Z Zhao - BMC genomics, 2012 - Springer
Background DNA methylation, which mainly occurs at CpG dinucleotides, is a dynamic
epigenetic regulation mechanism in most eukaryotic genomes. It is already known that …