Deciphering the epigenetic code: an overview of DNA methylation analysis methods

M Umer, Z Herceg - Antioxidants & redox signaling, 2013 - liebertpub.com
Significance: Methylation of cytosine in DNA is linked with gene regulation, and this has
profound implications in development, normal biology, and disease conditions in many …

DNA methylation data analysis and its application to cancer research

X Ma, YW Wang, MQ Zhang, AF Gazdar - Epigenomics, 2013 - Taylor & Francis
With the rapid development of genome-wide high-throughput technologies, including
expression arrays, SNP arrays and next-generation sequencing platforms, enormous …

Profiling DNA methylomes from microarray to genome-scale sequencing

YW Huang, THM Huang… - Technology in cancer …, 2010 - journals.sagepub.com
DNA cytosine methylation is a central epigenetic modification which plays critical roles in
cellular processes including genome regulation, development and disease. Here, we review …

Quantitative comparison of genome-wide DNA methylation mapping technologies

C Bock, EM Tomazou, AB Brinkman, F Müller… - Nature …, 2010 - nature.com
DNA methylation plays a key role in regulating eukaryotic gene expression. Although
mitotically heritable and stable over time, patterns of DNA methylation frequently change in …

Inter-individual variation of DNA methylation and its implications for large-scale epigenome mapping

C Bock, J Walter, M Paulsen… - Nucleic acids research, 2008 - academic.oup.com
Genomic DNA methylation profiles exhibit substantial variation within the human population,
with important functional implications for gene regulation. So far little is known about the …

Genome-wide analysis of DNA methylation patterns

D Zilberman, S Henikoff - 2007 - journals.biologists.com
Cytosine methylation is the most common covalent modification of DNA in eukaryotes. DNA
methylation has an important role in many aspects of biology, including development and …

[HTML][HTML] Guidance for DNA methylation studies: statistical insights from the Illumina EPIC array

G Mansell, TJ Gorrie-Stone, Y Bao, M Kumari… - BMC genomics, 2019 - Springer
Background There has been a steady increase in the number of studies aiming to identify
DNA methylation differences associated with complex phenotypes. Many of the challenges …

[HTML][HTML] DNA methylation analysis: choosing the right method

S Kurdyukov, M Bullock - Biology, 2016 - mdpi.com
In the burgeoning field of epigenetics, there are several methods available to determine the
methylation status of DNA samples. However, choosing the method that is best suited to …

[HTML][HTML] DMRfinder: efficiently identifying differentially methylated regions from MethylC-seq data

JM Gaspar, RP Hart - BMC bioinformatics, 2017 - Springer
Background DNA methylation is an epigenetic modification that is studied at a single-base
resolution with bisulfite treatment followed by high-throughput sequencing. After alignment …

DiseaseMeth: a human disease methylation database

J Lv, H Liu, J Su, X Wu, H Liu, B Li, X Xiao… - Nucleic acids …, 2012 - academic.oup.com
DNA methylation is an important epigenetic modification for genomic regulation in higher
organisms that plays a crucial role in the initiation and progression of diseases. The …