DNA methylation analysis techniques
C Dahl, P Guldberg - Biogerontology, 2003 - Springer
DNA methylation contributes to the control of gene expression and plays an essential role in
cellular physiology. Well-defined patterns of DNA methylation are established and fixed …
cellular physiology. Well-defined patterns of DNA methylation are established and fixed …
Review of processing and analysis methods for DNA methylation array data
CS Wilhelm-Benartzi, DC Koestler, MR Karagas… - British journal of …, 2013 - nature.com
The promise of epigenome-wide association studies and cancer-specific somatic DNA
methylation changes in improving our understanding of cancer, coupled with the decreasing …
methylation changes in improving our understanding of cancer, coupled with the decreasing …
An evaluation of methods correcting for cell-type heterogeneity in DNA methylation studies
K McGregor, S Bernatsky, I Colmegna, M Hudson… - Genome biology, 2016 - Springer
Background Many different methods exist to adjust for variability in cell-type mixture
proportions when analyzing DNA methylation studies. Here we present the result of an …
proportions when analyzing DNA methylation studies. Here we present the result of an …
Introduction to single-cell DNA methylation profiling methods
J Ahn, S Heo, J Lee, D Bang - Biomolecules, 2021 - mdpi.com
DNA methylation is an epigenetic mechanism that is related to mammalian cellular
differentiation, gene expression regulation, and disease. In several studies, DNA …
differentiation, gene expression regulation, and disease. In several studies, DNA …
Tools and strategies for analysis of genome-wide and gene-specific DNA methylation patterns
DNA methylation is a stable epigenetic mechanism that has important roles in the normal
function of a cell and therefore also in disease etiology. Accurate measurements of normal …
function of a cell and therefore also in disease etiology. Accurate measurements of normal …
MethylMix 2.0: an R package for identifying DNA methylation genes
DNA methylation is an important mechanism regulating gene transcription, and its role in
carcinogenesis has been extensively studied. Hyper and hypomethylation of genes is a …
carcinogenesis has been extensively studied. Hyper and hypomethylation of genes is a …
Evaluation of affinity-based genome-wide DNA methylation data: effects of CpG density, amplification bias, and copy number variation
DNA methylation is an essential epigenetic modification that plays a key role associated with
the regulation of gene expression during differentiation, but in disease states such as …
the regulation of gene expression during differentiation, but in disease states such as …
DNA methylation landscapes: provocative insights from epigenomics
MM Suzuki, A Bird - Nature reviews genetics, 2008 - nature.com
The genomes of many animals, plants and fungi are tagged by methylation of DNA cytosine.
To understand the biological significance of this epigenetic mark it is essential to know …
To understand the biological significance of this epigenetic mark it is essential to know …
Gene set enrichment analysis for genome-wide DNA methylation data
DNA methylation is one of the most commonly studied epigenetic marks, due to its role in
disease and development. Illumina methylation arrays have been extensively used to …
disease and development. Illumina methylation arrays have been extensively used to …
Hunting for the 5th base: Techniques for analyzing DNA methylation
O Ammerpohl, JI Martín-Subero, J Richter… - … et Biophysica Acta (BBA …, 2009 - Elsevier
BACKGROUND: In the recent past large progress has been made in the analysis of the
epigenome, the entirety of epigenetic modifications, and its meaning for the implementation …
epigenome, the entirety of epigenetic modifications, and its meaning for the implementation …