Seasonal stability and dynamics of DNA methylation in plants in a natural environment

T Ito, H Nishio, Y Tarutani, N Emura, MN Honjo… - Genes, 2019 - mdpi.com
DNA methylation has been considered a stable epigenetic mark but may respond to
fluctuating environments. However, it is unclear how they behave in natural environments …

Evolutionary patterns of genic DNA methylation vary across land plants

S Takuno, JH Ran, BS Gaut - Nature plants, 2016 - nature.com
Little is known about patterns of genic DNA methylation across the plant kingdom or about
the evolutionary processes that shape them. To characterize gene-body methylation (gbM) …

[PDF][PDF] Millennia-long epigenetic fluctuations generate intragenic DNA methylation variance in Arabidopsis populations

A Briffa, E Hollwey, Z Shahzad, JD Moore, DB Lyons… - Cell Systems, 2023 - cell.com
Methylation of CG dinucleotides (mCGs), which regulates eukaryotic genome functions, is
epigenetically propagated by Dnmt1/MET1 methyltransferases. How mCG is established …

DNA methylation in Arabidopsis has a genetic basis and shows evidence of local adaptation

MJ Dubin, P Zhang, D Meng, MS Remigereau… - elife, 2015 - elifesciences.org
Epigenome modulation potentially provides a mechanism for organisms to adapt, within and
between generations. However, neither the extent to which this occurs, nor the mechanisms …

Methylation interactions in Arabidopsis hybrids require RNA-directed DNA methylation and are influenced by genetic variation

Q Zhang, D Wang, Z Lang, L He… - Proceedings of the …, 2016 - National Acad Sciences
DNA methylation is a conserved epigenetic mark in plants and many animals. How parental
alleles interact in progeny to influence the epigenome is poorly understood. We analyzed …

Century-scale Methylome Stability in a Recently Diverged Arabidopsis thaliana Lineage

J Hagmann, C Becker, J Müller, O Stegle… - PLoS …, 2015 - journals.plos.org
There has been much excitement about the possibility that exposure to specific
environments can induce an ecological memory in the form of whole-sale, genome-wide …

The causes and consequences of DNA methylome variation in plants

DK Seymour, C Becker - Current opinion in plant biology, 2017 - Elsevier
Highlights•Epigenetic variation in plants is frequently linked to genetic variation.•Single large
effect mutations perturb the epigenetic landscape in trans.•DNA methylation regulates …

Population epigenetics: DNA methylation in the plant omics era

J Liu, X Zhong - Plant Physiology, 2024 - academic.oup.com
DNA methylation plays an important role in many biological processes. The mechanisms
underlying the establishment and maintenance of DNA methylation are well understood …

Widespread natural variation of DNA methylation within angiosperms

CE Niederhuth, AJ Bewick, L Ji, MS Alabady, KD Kim… - Genome biology, 2016 - Springer
Background DNA methylation is an important feature of plant epigenomes, involved in the
formation of heterochromatin and affecting gene expression. Extensive variation of DNA …

Accessing epigenetic variation in the plant methylome

KD Kim, M El Baidouri… - Briefings in Functional …, 2014 - academic.oup.com
Cytosine DNA methylation is the addition of a methyl group to the 5′ position of a cytosine,
which plays a crucial role in plant development and gene silencing. Genome-wide profiling …