Global analysis reveals the crucial roles of DNA methylation during rice seed development

MQ Xing, YJ Zhang, SR Zhou, WY Hu, XT Wu… - Plant …, 2015 - academic.oup.com
Seed development is an important process of reproductive development and consists of
embryo and endosperm development; both comprise several key processes. To determine …

[HTML][HTML] Single-base resolution maps of cultivated and wild rice methylomes and regulatory roles of DNA methylation in plant gene expression

X Li, J Zhu, F Hu, S Ge, M Ye, H Xiang, G Zhang… - BMC genomics, 2012 - Springer
Background DNA methylation plays important biological roles in plants and animals. To
examine the rice genomic methylation landscape and assess its functional significance, we …

Local DNA hypomethylation activates genes in rice endosperm

A Zemach, MY Kim, P Silva… - Proceedings of the …, 2010 - National Acad Sciences
Cytosine methylation silences transposable elements in plants, vertebrates, and fungi but
also regulates gene expression. Plant methylation is catalyzed by three families of enzymes …

[HTML][HTML] Genome-wide epigenetic regulation of gene transcription in maize seeds

X Lu, W Wang, W Ren, Z Chai, W Guo, R Chen… - PLoS …, 2015 - journals.plos.org
Background Epigenetic regulation is well recognized for its importance in gene expression
in organisms. DNA methylation, an important epigenetic mark, has received enormous …

Asymmetric variation in DNA methylation during domestication and de-domestication of rice

S Cao, K Chen, K Lu, S Chen, X Zhang, C Shen… - The Plant …, 2023 - academic.oup.com
Hundreds of plant species have been domesticated to feed human civilization, while some
crops have undergone de-domestication into agricultural weeds, threatening global food …

High-resolution mapping of epigenetic modifications of the rice genome uncovers interplay between DNA methylation, histone methylation, and gene expression

X Li, X Wang, K He, Y Ma, N Su, H He, V Stolc… - The Plant …, 2008 - academic.oup.com
We present high-resolution maps of DNA methylation and H3K4 di-and trimethylation of two
entire chromosomes and two fully sequenced centromeres in rice (Oryza sativa) shoots and …

[HTML][HTML] Genome-wide high-resolution mapping of DNA methylation identifies epigenetic variation across embryo and endosperm in Maize (Zea may)

P Wang, H Xia, Y Zhang, S Zhao, C Zhao, L Hou, C Li… - BMC genomics, 2015 - Springer
Background Epigenetic modifications play important roles in plant and animal development.
DNA methylation impacts the transposable element (TE) silencing, gene imprinting and …

[HTML][HTML] Dynamic changes of genome-wide DNA methylation during soybean seed development

YC An, W Goettel, Q Han, A Bartels, Z Liu, W Xiao - Scientific Reports, 2017 - nature.com
Seed development is programmed by expression of many genes in plants. Seed maturation
is an important developmental process to soybean seed quality and yield. DNA methylation …

Analysis of chromatin regulators reveals specific features of rice DNA methylation pathways

F Tan, C Zhou, Q Zhou, S Zhou, W Yang… - Plant …, 2016 - academic.oup.com
Plant DNA methylation that occurs at CG, CHG, and CHH sites (H= A, C, or T) is a hallmark
of the repression of repetitive sequences and transposable elements (TE s). The rice (Oryza …

Rice cytosine DNA methyltransferases–gene expression profiling during reproductive development and abiotic stress

R Sharma, RK Mohan Singh, G Malik… - The FEBS …, 2009 - Wiley Online Library
DNA methylation affects important developmental processes in both plants and animals. The
process of methylation of cytosines at C‐5 is catalysed by DNA methyltransferases …