[HTML][HTML] On the presence and role of human gene-body DNA methylation

D Jjingo, AB Conley, VY Soojin, VV Lunyak, IK Jordan - Oncotarget, 2012 - ncbi.nlm.nih.gov
DNA methylation of promoter sequences is a repressive epigenetic mark that down-
regulates gene expression. However, DNA methylation is more prevalent within gene …

Genome-wide analysis reveals that exon methylation facilitates its selective usage in the human transcriptome

S Li, J Zhang, S Huang, X He - Briefings in Bioinformatics, 2018 - academic.oup.com
DNA methylation, especially in promoter regions, is a well-characterized epigenetic marker
related to gene expression regulation in eukaryotes. However, the role of intragenic DNA …

[HTML][HTML] Characterization of tissue-specific differential DNA methylation suggests distinct modes of positive and negative gene expression regulation

J Wan, VF Oliver, G Wang, H Zhu, DJ Zack, SL Merbs… - BMC genomics, 2015 - Springer
Background DNA methylation plays an important role in regulating gene expression during
many biological processes. However, the mechanism of DNA-methylation-dependent gene …

Dynamic DNA methylation across diverse human cell lines and tissues

KE Varley, J Gertz, KM Bowling, SL Parker… - Genome …, 2013 - genome.cshlp.org
As studies of DNA methylation increase in scope, it has become evident that methylation has
a complex relationship with gene expression, plays an important role in defining cell types …

[HTML][HTML] Gene body methylation in cancer: molecular mechanisms and clinical applications

Q Wang, F Xiong, G Wu, W Liu, J Chen, B Wang… - Clinical …, 2022 - Springer
DNA methylation is an important epigenetic mechanism that regulates gene expression. To
date, most DNA methylation studies have focussed on CpG islands in the gene promoter …

[HTML][HTML] DNA methylation of distal regulatory sites characterizes dysregulation of cancer genes

D Aran, S Sabato, A Hellman - Genome biology, 2013 - Springer
Background Abnormal epigenetic marking is well documented in gene promoters of cancer
cells, but the study of distal regulatory siteshas lagged behind. We performed a systematic …

[HTML][HTML] Whole-genome bisulfite sequencing of multiple individuals reveals complementary roles of promoter and gene body methylation in transcriptional regulation

S Lou, HM Lee, H Qin, JW Li, Z Gao, X Liu, LL Chan… - Genome biology, 2014 - Springer
Background DNA methylation is an important type of epigenetic modification involved in
gene regulation. Although strong DNA methylation at promoters is widely recognized to be …

[HTML][HTML] Changes in correlation between promoter methylation and gene expression in cancer

M Moarii, V Boeva, JP Vert, F Reyal - BMC genomics, 2015 - Springer
Background Methylation of high-density CpG regions known as CpG Islands (CGIs) has
been widely described as a mechanism associated with gene expression regulation …

DNA methylation in health, disease, and cancer

DS Shames, JD Minna… - Current molecular …, 2007 - ingentaconnect.com
The spatial arrangement and three-dimensional structure of DNA in the nucleus is controlled
through the interdigitation of DNA binding proteins such as histones and their modifiers, the …

MethHC: a database of DNA methylation and gene expression in human cancer

WY Huang, SD Hsu, HY Huang, YM Sun… - Nucleic acids …, 2015 - academic.oup.com
Abstract We present MethHC (http://MethHC. mbc. nctu. edu. tw), a database comprising a
systematic integration of a large collection of DNA methylation data and mRNA/microRNA …