Chromatin and sequence features that define the fine and gross structure of genomic methylation patterns

JR Edwards, AH O'Donnell, RA Rollins… - Genome …, 2010 - genome.cshlp.org
Abnormalities of genomic methylation patterns are lethal or cause disease, but the cues that
normally designate CpG dinucleotides for methylation are poorly understood. We have …

The relationship of DNA methylation with age, gender and genotype in twins and healthy controls

MP Boks, EM Derks, DJ Weisenberger, E Strengman… - PloS one, 2009 - journals.plos.org
Cytosine-5 methylation within CpG dinucleotides is a potentially important mechanism of
epigenetic influence on human traits and disease. In addition to influences of age and …

Methylation quantitative trait loci (meQTLs) are consistently detected across ancestry, developmental stage, and tissue type

AK Smith, V Kilaru, M Kocak, LM Almli, KB Mercer… - BMC genomics, 2014 - Springer
Background Individual genotypes at specific loci can result in different patterns of DNA
methylation. These methylation quantitative trait loci (meQTLs) influence methylation across …

Methylomics of gene expression in human monocytes

Y Liu, J Ding, LM Reynolds, K Lohman… - Human molecular …, 2013 - academic.oup.com
DNA methylation is one of several epigenetic mechanisms that contribute to the regulation of
gene expression; however, the extent to which methylation of CpG dinucleotides correlates …

Genetic analysis of DNA methylation and gene expression levels in whole blood of healthy human subjects

KR van Eijk, S de Jong, MPM Boks, T Langeveld… - BMC genomics, 2012 - Springer
Background The predominant model for regulation of gene expression through DNA
methylation is an inverse association in which increased methylation results in decreased …

Genetic impacts on DNA methylation: research findings and future perspectives

S Villicaña, JT Bell - Genome biology, 2021 - Springer
Multiple recent studies highlight that genetic variants can have strong impacts on a
significant proportion of the human DNA methylome. Methylation quantitative trait loci, or …

Large-scale structure of genomic methylation patterns

RA Rollins, F Haghighi, JR Edwards, R Das… - Genome …, 2006 - genome.cshlp.org
The mammalian genome depends on patterns of methylated cytosines for normal function,
but the relationship between genomic methylation patterns and the underlying sequence is …

DNA methylation profile of tissue-dependent and differentially methylated regions (T-DMRs) in mouse promoter regions demonstrating tissue-specific gene expression

S Yagi, K Hirabayashi, S Sato, W Li… - Genome …, 2008 - genome.cshlp.org
DNA methylation constitutes an important epigenetic regulation mechanism in many
eukaryotes, although the extent of DNA methylation in the regulation of gene expression in …

Epigenetic profiling of somatic tissues from human autopsy specimens identifies tissue-and individual-specific DNA methylation patterns

HM Byun, KD Siegmund, F Pan… - Human molecular …, 2009 - academic.oup.com
DNA methylation is known to be associated with cell differentiation, aging, disease and
cancer. There exists an expanding base of knowledge regarding tissue-specific DNA …

Functional annotation of the human brain methylome identifies tissue-specific epigenetic variation across brain and blood

MN Davies, M Volta, R Pidsley, K Lunnon, A Dixit… - Genome biology, 2012 - Springer
Background Dynamic changes to the epigenome play a critical role in establishing and
maintaining cellular phenotype during differentiation, but little is known about the normal …