Minfi: a flexible and comprehensive Bioconductor package for the analysis of Infinium DNA methylation microarrays
Abstract Motivation: The recently released Infinium HumanMethylation450 array (the
'450k'array) provides a high-throughput assay to quantify DNA methylation (DNAm) at∼ 450 …
'450k'array) provides a high-throughput assay to quantify DNA methylation (DNAm) at∼ 450 …
RnBeads 2.0: comprehensive analysis of DNA methylation data
DNA methylation is a widely investigated epigenetic mark with important roles in
development and disease. High-throughput assays enable genome-scale DNA methylation …
development and disease. High-throughput assays enable genome-scale DNA methylation …
[HTML][HTML] A cross-package Bioconductor workflow for analysing methylation array data
Methylation in the human genome is known to be associated with development and disease.
The Illumina Infinium methylation arrays are by far the most common way to interrogate …
The Illumina Infinium methylation arrays are by far the most common way to interrogate …
DNA methylation data analysis and its application to cancer research
With the rapid development of genome-wide high-throughput technologies, including
expression arrays, SNP arrays and next-generation sequencing platforms, enormous …
expression arrays, SNP arrays and next-generation sequencing platforms, enormous …
missMethyl: an R package for analyzing data from Illumina's HumanMethylation450 platform
DNA methylation is one of the most commonly studied epigenetic modifications due to its
role in both disease and development. The Illumina HumanMethylation450 BeadChip is a …
role in both disease and development. The Illumina HumanMethylation450 BeadChip is a …
Using high-density DNA methylation arrays to profile copy number alterations
The integration of genomic and epigenomic data is an increasingly popular approach for
studying the complex mechanisms driving cancer development. We have developed a …
studying the complex mechanisms driving cancer development. We have developed a …
Additional annotation enhances potential for biologically-relevant analysis of the Illumina Infinium HumanMethylation450 BeadChip array
Background Measurement of genome-wide DNA methylation (DNAm) has become an
important avenue for investigating potential physiologically-relevant epigenetic changes …
important avenue for investigating potential physiologically-relevant epigenetic changes …
IMA: an R package for high-throughput analysis of Illumina's 450K Infinium methylation data
The Illumina Infinium HumanMethylation450 BeadChip is a newly designed high-density
microarray for quantifying the methylation level of over 450 000 CpG sites within human …
microarray for quantifying the methylation level of over 450 000 CpG sites within human …
ChAMP: 450k chip analysis methylation pipeline
TJ Morris, LM Butcher, A Feber, AE Teschendorff… - …, 2014 - academic.oup.com
Abstract The Illumina Infinium HumanMethylation450 BeadChip is a new platform for high-
throughput DNA methylation analysis. Several methods for normalization and processing of …
throughput DNA methylation analysis. Several methods for normalization and processing of …
Bigmelon: tools for analysing large DNA methylation datasets
Motivation The datasets generated by DNA methylation analyses are getting bigger. With the
release of the HumanMethylationEPIC micro-array and datasets containing thousands of …
release of the HumanMethylationEPIC micro-array and datasets containing thousands of …