LTR retrotransposons transcribed in oocytes drive species-specific and heritable changes in DNA methylation

J Brind'Amour, H Kobayashi, J Richard Albert… - Nature …, 2018 - nature.com
De novo DNA methylation (DNAme) during mouse oogenesis occurs within transcribed
regions enriched for H3K36me3. As many oocyte transcripts originate in long terminal …

Deep sequencing and de novo assembly of the mouse oocyte transcriptome define the contribution of transcription to the DNA methylation landscape

L Veselovska, SA Smallwood, H Saadeh, KR Stewart… - Genome biology, 2015 - Springer
Background Previously, a role was demonstrated for transcription in the acquisition of DNA
methylation at imprinted control regions in oocytes. Definition of the oocyte DNA methylome …

A unique regulatory phase of DNA methylation in the early mammalian embryo

ZD Smith, MM Chan, TS Mikkelsen, H Gu, A Gnirke… - Nature, 2012 - nature.com
DNA methylation is highly dynamic during mammalian embryogenesis. It is broadly
accepted that the paternal genome is actively depleted of 5-methylcytosine at fertilization …

Mouse oocyte methylomes at base resolution reveal genome-wide accumulation of non-CpG methylation and role of DNA methyltransferases

K Shirane, H Toh, H Kobayashi, F Miura, H Chiba… - PLoS …, 2013 - journals.plos.org
DNA methylation is an epigenetic modification that plays a crucial role in normal mammalian
development, retrotransposon silencing, and cellular reprogramming. Although methylation …

DNA methylation reprogramming of functional elements during mammalian embryonic development

C Li, Y Fan, G Li, X Xu, J Duan, R Li, X Kang, X Ma… - Cell discovery, 2018 - nature.com
DNA methylation plays important roles during development. However, the DNA methylation
reprogramming of functional elements has not been fully investigated during mammalian …

Genome-wide analysis of DNA methylation dynamics during early human development

H Okae, H Chiba, H Hiura, H Hamada, A Sato… - PLoS …, 2014 - journals.plos.org
DNA methylation is globally reprogrammed during mammalian preimplantation
development, which is critical for normal development. Recent reduced representation …

Temporal uncoupling of the DNA methylome and transcriptional repression during embryogenesis

O Bogdanović, SW Long, SJ van Heeringen… - Genome …, 2011 - genome.cshlp.org
DNA methylation is a tightly regulated epigenetic mark associated with transcriptional
repression. Next-generation sequencing of purified methylated DNA obtained from early …

Protection against de novo methylation is instrumental in maintaining parent-of-origin methylation inherited from the gametes

C Proudhon, R Duffié, S Ajjan, M Cowley, J Iranzo… - Molecular cell, 2012 - cell.com
Identifying loci with parental differences in DNA methylation is key to unraveling parent-of-
origin phenotypes. By conducting a MeDIP-Seq screen in maternal-methylation free …

Human oocyte-derived methylation differences persist in the placenta revealing widespread transient imprinting

M Sanchez-Delgado, F Court, E Vidal, J Medrano… - PLoS …, 2016 - journals.plos.org
Thousands of regions in gametes have opposing methylation profiles that are largely
resolved during the post-fertilization epigenetic reprogramming. However some specific …

Dynamic CpG island methylation landscape in oocytes and preimplantation embryos

SA Smallwood, S Tomizawa, F Krueger, N Ruf… - Nature …, 2011 - nature.com
Elucidating how and to what extent CpG islands (CGIs) are methylated in germ cells is
essential to understand genomic imprinting and epigenetic reprogramming,,. Here we …