An evaluation of supervised methods for identifying differentially methylated regions in Illumina methylation arrays
Epigenome-wide association studies (EWASs) have become increasingly popular for
studying DNA methylation (DNAm) variations in complex diseases. The Illumina methylation …
studying DNA methylation (DNAm) variations in complex diseases. The Illumina methylation …
coMethDMR: accurate identification of co-methylated and differentially methylated regions in epigenome-wide association studies with continuous phenotypes
Recent technology has made it possible to measure DNA methylation profiles in a cost-
effective and comprehensive genome-wide manner using array-based technology for …
effective and comprehensive genome-wide manner using array-based technology for …
GLINT: a user-friendly toolset for the analysis of high-throughput DNA-methylation array data
GLINT is a user-friendly command-line toolset for fast analysis of genome-wide DNA
methylation data generated using the Illumina human methylation arrays. GLINT, which …
methylation data generated using the Illumina human methylation arrays. GLINT, which …
Gene set enrichment analysis for genome-wide DNA methylation data
DNA methylation is one of the most commonly studied epigenetic marks, due to its role in
disease and development. Illumina methylation arrays have been extensively used to …
disease and development. Illumina methylation arrays have been extensively used to …
A framework for analyzing DNA methylation data from Illumina Infinium HumanMethylation450 BeadChip
Z Wang, XL Wu, Y Wang - BMC bioinformatics, 2018 - Springer
Background DNA methylation has been identified to be widely associated to complex
diseases. Among biological platforms to profile DNA methylation in human, the Illumina …
diseases. Among biological platforms to profile DNA methylation in human, the Illumina …
MethLAB: a graphical user interface package for the analysis of array-based DNA methylation data
Recent evidence suggests that DNA methylation changes may underlie numerous complex
traits and diseases. The advent of commercial, array-based methods to interrogate DNA …
traits and diseases. The advent of commercial, array-based methods to interrogate DNA …
EWAS Data Hub: a resource of DNA methylation array data and metadata
Abstract Epigenome-Wide Association Study (EWAS) has become an effective strategy to
explore epigenetic basis of complex traits. Over the past decade, a large amount of …
explore epigenetic basis of complex traits. Over the past decade, a large amount of …
A statistical framework for Illumina DNA methylation arrays
Abstract Motivation: The Illumina BeadArray is a popular platform for profiling DNA
methylation, an important epigenetic event associated with gene silencing and …
methylation, an important epigenetic event associated with gene silencing and …
The ENmix DNA methylation analysis pipeline for Illumina BeadChip and comparisons with seven other preprocessing pipelines
Background Illumina DNA methylation arrays are high-throughput platforms for cost-effective
genome-wide profiling of individual CpGs. Experimental and technical factors introduce …
genome-wide profiling of individual CpGs. Experimental and technical factors introduce …
A data-driven approach to preprocessing Illumina 450K methylation array data
Background As the most stable and experimentally accessible epigenetic mark, DNA
methylation is of great interest to the research community. The landscape of DNA …
methylation is of great interest to the research community. The landscape of DNA …