[HTML][HTML] RnBeads 2.0: comprehensive analysis of DNA methylation data
DNA methylation is a widely investigated epigenetic mark with important roles in
development and disease. High-throughput assays enable genome-scale DNA methylation …
development and disease. High-throughput assays enable genome-scale DNA methylation …
Minfi: a flexible and comprehensive Bioconductor package for the analysis of Infinium DNA methylation microarrays
Abstract Motivation: The recently released Infinium HumanMethylation450 array (the
'450k'array) provides a high-throughput assay to quantify DNA methylation (DNAm) at∼ 450 …
'450k'array) provides a high-throughput assay to quantify DNA methylation (DNAm) at∼ 450 …
Discovery of cross-reactive probes and polymorphic CpGs in the Illumina Infinium HumanMethylation450 microarray
Y Chen, M Lemire, S Choufani, DT Butcher… - Epigenetics, 2013 - Taylor & Francis
DNA methylation, an important type of epigenetic modification in humans, participates in
crucial cellular processes, such as embryonic development, X-inactivation, genomic …
crucial cellular processes, such as embryonic development, X-inactivation, genomic …
Low-level processing of Illumina Infinium DNA methylation beadarrays
TJ Triche Jr, DJ Weisenberger… - Nucleic acids …, 2013 - academic.oup.com
We propose a novel approach to background correction for Infinium HumanMethylation data
to account for technical variation in background fluorescence signal. Our approach …
to account for technical variation in background fluorescence signal. Our approach …
eFORGE v2. 0: updated analysis of cell type-specific signal in epigenomic data
CE Breeze, AP Reynolds, J Van Dongen… - …, 2019 - academic.oup.com
Abstract Summary The Illumina Infinium EPIC BeadChip is a new high-throughput array for
DNA methylation analysis, extending the earlier 450k array by over 400 000 new sites …
DNA methylation analysis, extending the earlier 450k array by over 400 000 new sites …
Genome-scale analysis of DNA methylation in colorectal cancer using Infinium HumanMethylation450 BeadChips
VA Naumov, EV Generozov, NB Zaharjevskaya… - Epigenetics, 2013 - Taylor & Francis
Illumina's Infinium HumanMethylation450 BeadChip arrays were used to examine genome-
wide DNA methylation profiles in 22 sample pairs from colorectal cancer (CRC) and …
wide DNA methylation profiles in 22 sample pairs from colorectal cancer (CRC) and …
Removing unwanted variation in a differential methylation analysis of Illumina HumanMethylation450 array data
J Maksimovic, JA Gagnon-Bartsch… - Nucleic acids …, 2015 - academic.oup.com
Due to their relatively low-cost per sample and broad, gene-centric coverage of CpGs across
the human genome, Illumina's 450k arrays are widely used in large scale differential …
the human genome, Illumina's 450k arrays are widely used in large scale differential …
[HTML][HTML] Gene set enrichment analysis for genome-wide DNA methylation data
DNA methylation is one of the most commonly studied epigenetic marks, due to its role in
disease and development. Illumina methylation arrays have been extensively used to …
disease and development. Illumina methylation arrays have been extensively used to …
EWAS Data Hub: a resource of DNA methylation array data and metadata
Abstract Epigenome-Wide Association Study (EWAS) has become an effective strategy to
explore epigenetic basis of complex traits. Over the past decade, a large amount of …
explore epigenetic basis of complex traits. Over the past decade, a large amount of …
[HTML][HTML] Batch effect correction for genome-wide methylation data with Illumina Infinium platform
Background Genome-wide methylation profiling has led to more comprehensive insights
into gene regulation mechanisms and potential therapeutic targets. Illumina Human …
into gene regulation mechanisms and potential therapeutic targets. Illumina Human …