Novel DNA methylation signatures of tobacco smoking with trans-ethnic effects
C Christiansen, JE Castillo-Fernandez… - Clinical …, 2021 - Springer
Background Smoking remains one of the leading preventable causes of death. Smoking
leaves a strong signature on the blood methylome as shown in multiple studies using the …
leaves a strong signature on the blood methylome as shown in multiple studies using the …
DNA unmethylome profiling by covalent capture of CpG sites
Dynamic patterns of cytosine-5 methylation and successive hydroxylation are part of
epigenetic regulation in eukaryotes, including humans, which contributes to normal …
epigenetic regulation in eukaryotes, including humans, which contributes to normal …
A Bayesian deconvolution strategy for immunoprecipitation-based DNA methylome analysis
DNA methylation is an indispensible epigenetic modification required for regulating the
expression of mammalian genomes. Immunoprecipitation-based methods for DNA …
expression of mammalian genomes. Immunoprecipitation-based methods for DNA …
Quantitative comparison of genome-wide DNA methylation mapping technologies
DNA methylation plays a key role in regulating eukaryotic gene expression. Although
mitotically heritable and stable over time, patterns of DNA methylation frequently change in …
mitotically heritable and stable over time, patterns of DNA methylation frequently change in …
A mammalian methylation array for profiling methylation levels at conserved sequences
Infinium methylation arrays are not available for the vast majority of non-human mammals.
Moreover, even if species-specific arrays were available, probe differences between them …
Moreover, even if species-specific arrays were available, probe differences between them …
Comprehensive DNA methylation profiling in a human cancer genome identifies novel epigenetic targets
JM Ordway, JA Bedell, RW Citek, A Nunberg… - …, 2006 - academic.oup.com
Using a unique microarray platform for cytosine methylation profiling, the DNA methylation
landscape of the human genome was monitored at more than 21 000 sites, including 79% of …
landscape of the human genome was monitored at more than 21 000 sites, including 79% of …
MEDME: an experimental and analytical methodology for the estimation of DNA methylation levels based on microarray derived MeDIP-enrichment
M Pelizzola, Y Koga, AE Urban… - Genome …, 2008 - genome.cshlp.org
DNA methylation is an important component of epigenetic modifications that influences the
transcriptional machinery and is aberrant in many human diseases. Several methods have …
transcriptional machinery and is aberrant in many human diseases. Several methods have …
Exploring genome-wide DNA methylation profiles altered in hepatocellular carcinoma using Infinium HumanMethylation 450 BeadChips
J Shen, S Wang, YJ Zhang, HC Wu, MG Kibriya… - Epigenetics, 2013 - Taylor & Francis
Hepatocellular carcinoma (HCC) incidence has increased in the US and also has one of the
fastest growing death rates of any cancer. The purpose of the current study was to discover …
fastest growing death rates of any cancer. The purpose of the current study was to discover …
Comparison of Beta-value and M-value methods for quantifying methylation levels by microarray analysis
Background High-throughput profiling of DNA methylation status of CpG islands is crucial to
understand the epigenetic regulation of genes. The microarray-based Infinium methylation …
understand the epigenetic regulation of genes. The microarray-based Infinium methylation …
Evaluation of the Infinium Methylation 450K technology
S Dedeurwaerder, M Defrance, E Calonne, H Denis… - …, 2011 - Taylor & Francis
Aims: Studies of DNA methylomes hold enormous promise for biomedicine but are
hampered by the technological challenges of analyzing many samples cost-effectively …
hampered by the technological challenges of analyzing many samples cost-effectively …