DNA methylation and histone modifications are essential for regulation of stem cell formation and differentiation in zebrafish development

AD Marchione, Z Thompson… - Briefings in functional …, 2021 - academic.oup.com
The complex processes necessary for embryogenesis require a gene regulatory network
that is complex and systematic. Gene expression regulates development and …

DNA methylation dynamics during epigenetic reprogramming of medaka embryo

X Wang, RK Bhandari - Epigenetics, 2019 - Taylor & Francis
Post-fertilization epigenome reprogramming erases epigenetic marks transmitted through
gametes and establishes new marks during mid-blastula stages. The mouse embryo …

[HTML][HTML] Sperm, but not oocyte, DNA methylome is inherited by zebrafish early embryos

L Jiang, J Zhang, JJ Wang, L Wang, L Zhang, G Li… - Cell, 2013 - cell.com
methylcytosine is a major epigenetic modification that is sometimes called" the fifth
nucleotide." However, our knowledge of how offspring inherit the DNA methylome from …

Enhancers reside in a unique epigenetic environment during early zebrafish development

LJT Kaaij, M Mokry, M Zhou, M Musheev, G Geeven… - Genome biology, 2016 - Springer
Background Enhancers, not promoters, are the most dynamic in their DNA methylation
status throughout development and differentiation. Generally speaking, enhancers that are …

Genome-wide DNA methylation profiling in zebrafish

PJ Murphy, BR Cairns - Methods in Cell Biology, 2016 - Elsevier
Genomic DNA methylation functions to repress gene expression by interfering with
transcription factor binding and/or recruiting repressive chromatin machinery. Recent data …

DNA methylation reprogramming in teleosts

S Matlosz, SR Franzdóttir, A Pálsson… - Evolution & …, 2024 - Wiley Online Library
Early embryonic development is crucially important but also remarkably diverse among
animal taxa. Axis formation and cell lineage specification occur due to both spatial and …

DNA methylation in zebrafish

MG Goll, ME Halpern - Progress in molecular biology and translational …, 2011 - Elsevier
DNA methylation is crucial for normal development and cellular differentiation in many large-
genome eukaryotes. The small tropical freshwater fish Danio rerio (zebrafish) has recently …

Retention of paternal DNA methylome in the developing zebrafish germline

K Skvortsova, K Tarbashevich, M Stehling… - Nature …, 2019 - nature.com
Two waves of DNA methylation reprogramming occur during mammalian embryogenesis;
during preimplantation development and during primordial germ cell (PGC) formation …

Evolutionary conservation of embryonic DNA methylome remodelling in distantly related teleost species

SE Ross, J Vázquez-Marín, KRB Gert… - Nucleic Acids …, 2023 - academic.oup.com
Methylation of cytosines in the CG context (mCG) is the most abundant DNA modification in
vertebrates that plays crucial roles in cellular differentiation and identity. After fertilization …

The developmental epigenomics toolbox: ChIP-seq and MethylCap-seq profiling of early zebrafish embryos

O Bogdanović, A Fernández-Miñán, JJ Tena… - Methods, 2013 - Elsevier
Genome-wide profiling of DNA methylation and histone modifications answered many
questions as to how the genes are regulated on a global scale and what their epigenetic …