[HTML][HTML] Identification of cis regulatory features in the embryonic zebrafish genome through large-scale profiling of H3K4me1 and H3K4me3 binding sites

AW Aday, LJ Zhu, A Lakshmanan, J Wang… - Developmental …, 2011 - Elsevier
An organism's genome sequence serves as a blueprint for the proteins and regulatory RNAs
essential for cellular function. The genome also harbors cis-acting non-coding sequences …

The evolution of invertebrate gene body methylation

S Sarda, J Zeng, BG Hunt, SV Yi - Molecular biology and …, 2012 - academic.oup.com
DNA methylation of transcription units (gene bodies) occurs in the genomes of many animal
and plant species. Phylogenetic persistence of gene body methylation implies biological …

Evolutionary transition of promoter and gene body DNA methylation across invertebrate–vertebrate boundary

TE Keller, P Han, SV Yi - Molecular biology and evolution, 2016 - academic.oup.com
Genomes of invertebrates and vertebrates exhibit highly divergent patterns of DNA
methylation. Invertebrate genomes tend to be sparsely methylated, and DNA methylation is …

[PDF][PDF] DNA methylation and control of gene expression in vertebrate development

RR Meehan, I Stancheva - Essays in biochemistry, 2001 - researchgate.net
DNA methylation has the ability to repress transcription; in addition, the pattern of
methylation can be stably inherited during successive cell divisions [1]. These two features …

[HTML][HTML] Zebrafish preserve global germline DNA methylation while sex-linked rDNA is amplified and demethylated during feminisation

O Ortega-Recalde, RC Day, NJ Gemmell… - Nature …, 2019 - nature.com
The germline is the only cellular lineage capable of transferring genetic information from one
generation to the next. Intergenerational transmission of epigenetic memory through the …

DNA methylation and the preservation of cell identity

O Bogdanović, R Lister - Current opinion in genetics & development, 2017 - Elsevier
DNA methylation is a major epigenetic modification of vertebrate genomes that is mostly
associated with transcriptional repression. During embryogenesis, DNA methylation …

[HTML][HTML] Epigenetic features in the oyster Crassostrea gigas suggestive of functionally relevant promoter DNA methylation in invertebrates

G Rivière - Frontiers in physiology, 2014 - frontiersin.org
DNA methylation is evolutionarily conserved. Vertebrates exhibit high, widespread DNA
methylation whereas invertebrate genomes are less methylated, predominantly within gene …

[HTML][HTML] Genome-wide analysis of DNA methylation dynamics during early human development

H Okae, H Chiba, H Hiura, H Hamada, A Sato… - PLoS …, 2014 - journals.plos.org
DNA methylation is globally reprogrammed during mammalian preimplantation
development, which is critical for normal development. Recent reduced representation …

[HTML][HTML] Associations between DNA methylation and gene regulation depend on chromatin accessibility during transgenerational plasticity

SN Bogan, ME Strader, GE Hofmann - BMC biology, 2023 - Springer
Background Epigenetic processes are proposed to be a mechanism regulating gene
expression during phenotypic plasticity. However, environmentally induced changes in DNA …

[HTML][HTML] Beyond DNA: programming and inheritance of parental methylomes

JA Hackett, MA Surani - Cell, 2013 - cell.com
Epigenetic reprogramming of parental genomes following fertilization is important to ensure
compatibility for totipotency and development thereafter. New studies by Jiang et al. and …