Live imaging of root–bacteria interactions in a microfluidics setup

H Massalha, E Korenblum, S Malitsky… - Proceedings of the …, 2017 - National Acad Sciences
Plant roots play a dominant role in shaping the rhizosphere, the environment in which
interaction with diverse microorganisms occurs. Tracking the dynamics of root–microbe …

Plant–environment microscopy tracks interactions of Bacillus subtilis with plant roots across the entire rhizosphere

Y Liu, D Patko, I Engelhardt… - Proceedings of the …, 2021 - National Acad Sciences
Our understanding of plant–microbe interactions in soil is limited by the difficulty of
observing processes at the microscopic scale throughout plants' large volume of influence …

High-throughput cultivation and identification of bacteria from the plant root microbiota

J Zhang, YX Liu, X Guo, Y Qin, R Garrido-Oter… - Nature …, 2021 - nature.com
Cultivating native bacteria from roots of plants grown in a given environment is essential for
dissecting the functions of the root microbiota for plant growth and health with strain-specific …

Deciphering bacterial mechanisms of root colonization

HE Knights, B Jorrin, TL Haskett… - Environmental …, 2021 - Wiley Online Library
Bacterial colonization of the rhizosphere is critical for the establishment of plant–bacteria
interactions that represent a key determinant of plant health and productivity. Plants …

Plant-in-chip: Microfluidic system for studying root growth and pathogenic interactions in Arabidopsis

A Parashar, S Pandey - Applied physics letters, 2011 - pubs.aip.org
We report a microfluidic platform for the hydroponic growth of Arabidopsis plants with high-
resolution visualization of root development and root-pathogen interactions. The platform …

Ecosystem fabrication (EcoFAB) protocols for the construction of laboratory ecosystems designed to study plant-microbe interactions

J Gao, J Sasse, KM Lewald, K Zhalnina… - JoVE (Journal of …, 2018 - jove.com
Beneficial plant-microbe interactions offer a sustainable biological solution with the potential
to boost low-input food and bioenergy production. A better mechanistic understanding of …

The RootChip: an integrated microfluidic chip for plant science

G Grossmann, WJ Guo, DW Ehrhardt… - The plant …, 2011 - academic.oup.com
Studying development and physiology of growing roots is challenging due to limitations
regarding cellular and subcellular analysis under controlled environmental conditions. We …

Root surface as a frontier for plant microbiome research

MGA van der Heijden… - Proceedings of the …, 2015 - National Acad Sciences
Plants associate—analogous to animals or us humans—with a multitude of microorganisms,
which collectively function as a microbiome. A major discovery of the last decade is that …

Exploring the root microbiome: extracting bacterial community data from the soil, rhizosphere, and root endosphere

T Simmons, DF Caddell, S Deng… - JoVE (Journal of …, 2018 - jove.com
The intimate interaction between plant host and associated microorganisms is crucial in
determining plant fitness, and can foster improved tolerance to abiotic stresses and …

New methods to unravel rhizosphere processes

E Oburger, H Schmidt - Trends in plant science, 2016 - cell.com
Root-triggered processes (growth, uptake and release of solutes) vary in space and time,
and interact with heterogeneous soil microenvironments that provide habitats for (micro) …