Serum-based culture conditions provoke gene expression variability in mouse embryonic stem cells as revealed by single-cell analysis

G Guo, L Pinello, X Han, S Lai, L Shen, TW Lin, K Zou… - Cell reports, 2016 - cell.com
Variation in gene expression is an important feature of mouse embryonic stem cells (ESCs).
However, the mechanisms responsible for global gene expression variation in ESCs are not …

Transcriptome profiling of human and murine ESCs identifies divergent paths required to maintain the stem cell state

CL Wei, T Miura, P Robson, SK Lim, XQ Xu… - Stem …, 2005 - academic.oup.com
Human embryonic stem cells (hESCs) are an important source of stem cells in regenerative
medicine, and much remains unknown about their molecular characteristics. To develop a …

[HTML][HTML] Gene expression variability in mammalian embryonic stem cells using single cell RNA-seq data

A Mantsoki, G Devailly, A Joshi - Computational biology and chemistry, 2016 - Elsevier
Background Gene expression heterogeneity contributes to development as well as disease
progression. Due to technological limitations, most studies to date have focused on …

Transcriptome coexpression map of human embryonic stem cells

H Li, Y Liu, S Shin, Y Sun, JF Loring, MP Mattson… - BMC genomics, 2006 - Springer
Background Human embryonic stem (ES) cells hold great promise for medicine and science.
The transcriptome of human ES cells has been studied in detail in recent years. However, no …

Tracing the derivation of embryonic stem cells from the inner cell mass by single-cell RNA-Seq analysis

F Tang, C Barbacioru, S Bao, C Lee, E Nordman… - Cell stem cell, 2010 - cell.com
During the transition from the inner cell mass (ICM) cells of blastocysts to pluripotent
embryonic stem cells (ESCs) in vitro, a normal developmental program is replaced in cells …

[HTML][HTML] Cross-species transcriptional profiles establish a functional portrait of embryonic stem cells

Y Sun, H Li, Y Liu, S Shin, MP Mattson, MS Rao… - Genomics, 2007 - Elsevier
An understanding of the regulatory mechanisms responsible for pluripotency in embryonic
stem cells (ESCs) is critical for realizing their potential in medicine and science. Significant …

Embryonic stem cell culture conditions support distinct states associated with different developmental stages and potency

JM Gonzalez, SM Morgani, RA Bone, K Bonderup… - Stem cell reports, 2016 - cell.com
Embryonic stem cells (ESCs) are cell lines derived from the mammalian pre-implantation
embryo. Here we assess the impact of derivation and culture conditions on both functional …

Transcriptome variations among human embryonic stem cell lines are associated with their differentiation propensity

C Sun, J Zhang, D Zheng, J Wang, H Yang, X Zhang - PloS one, 2018 - journals.plos.org
Human embryonic stem cells (hESCs) have the potential to form any cell type in the body,
making them attractive cell sources in drug screening, regenerative medicine, disease and …

Meta-analysis of differentiating mouse embryonic stem cell gene expression kinetics reveals early change of a small gene set

CH Glover, M Marin, CJ Eaves… - PLoS computational …, 2006 - journals.plos.org
Stem cell differentiation involves critical changes in gene expression. Identification of these
should provide endpoints useful for optimizing stem cell propagation as well as potential …

Concise review: epigenetic mechanisms contribute to pluripotency and cell lineage determination of embryonic stem cells

Q Gan, T Yoshida, OG McDonald, GK Owens - Stem cells, 2007 - academic.oup.com
Epigenetic mechanisms, such as histone modifications and DNA methylation, have been
shown to play a key role in the regulation of gene transcription. Results of recent studies …