[HTML][HTML] DNA motifs associated with aberrant CpG island methylation

FA Feltus, EK Lee, JF Costello, C Plass, PM Vertino - Genomics, 2006 - Elsevier
Epigenetic silencing involving the aberrant methylation of promoter region CpG islands is
widely recognized as a tumor suppressor silencing mechanism in cancer. However, the …

Predicting aberrant CpG island methylation

FA Feltus, EK Lee, JF Costello… - Proceedings of the …, 2003 - National Acad Sciences
Epigenetic silencing associated with aberrant methylation of promoter region CpG islands is
one mechanism leading to loss of tumor suppressor function in human cancer. Profiling of …

Methylation profiling of CpG islands in human breast cancer cells

THM Huang, MR Perry, DE Laux - Human molecular genetics, 1999 - academic.oup.com
CpG island hypermethylation is known to be associated with gene silencing in cancer. This
epigenetic event is generally accepted as a stochastic process in tumor cells resulting from …

A multifactorial signature of DNA sequence and polycomb binding predicts aberrant CpG island methylation

MT McCabe, EK Lee, PM Vertino - Cancer research, 2009 - AACR
Aberrant CpG island methylation is associated with transcriptional silencing of regulatory
genes in human cancer. Although most CpG islands remain unmethylated, a subset accrues …

Evaluation of single CpG sites as proxies of CpG island methylation states at the genome scale

V Barrera, MA Peinado - Nucleic acids research, 2012 - academic.oup.com
Methylation of a CpG island is a faithful marker of silencing of its associated gene. Different
approaches report the methylation status of a CpG island based on the determination of one …

Altered methylation patterns in cancer cell genomes: cause or consequence?

S Baylin, TH Bestor - Cancer cell, 2002 - cell.com
CpG islands are associated with at least half of all cellular genes and are normally
methylation-free. Dense methylation of cytosine residues within islands causes strong and …

Aberrant CpG-island methylation has non-random and tumour-type–specific patterns

JF Costello, MC Frühwald, DJ Smiraglia, LJ Rush… - Nature …, 2000 - nature.com
CpG islands frequently contain gene promoters or exons 1 and are usually unmethylated in
normal cells 1, 2, 3. Methylation of CpG islands is associated with delayed replication …

Genome-wide profiling of DNA methylation reveals a class of normally methylated CpG island promoters

L Shen, Y Kondo, Y Guo, J Zhang, L Zhang… - PLoS …, 2007 - journals.plos.org
The role of CpG island methylation in normal development and cell differentiation is of keen
interest, but remains poorly understood. We performed comprehensive DNA methylation …

Genome-wide CpG island methylation and intergenic demethylation propensities vary among different tumor sites

ST Lee, JL Wiemels - Nucleic acids research, 2016 - academic.oup.com
The epigenetic landscape of cancer includes both focal hypermethylation and broader
hypomethylation in a genome-wide manner. By means of a comprehensive genomic …

An AscI boundary library for the studies of genetic and epigenetic alterations in CpG islands

Z Dai, D Weichenhan, YZ Wu, JL Hall, LJ Rush… - Genome …, 2002 - genome.cshlp.org
Knudson's two-hit hypothesis postulates that genetic alterations in both alleles are required
for the inactivation of tumor-suppressor genes. Genetic alterations include small or large …