Transcription factors: from enhancer binding to developmental control

F Spitz, EEM Furlong - Nature reviews genetics, 2012 - nature.com
Developmental progression is driven by specific spatiotemporal domains of gene
expression, which give rise to stereotypically patterned embryos even in the presence of …

[HTML][HTML] Evolution of transcription factor function as a mechanism for changing metazoan developmental gene regulatory networks

AM Cheatle Jarvela, VF Hinman - Evodevo, 2015 - Springer
The form that an animal takes during development is directed by gene regulatory networks
(GRNs). Developmental GRNs interpret maternally deposited molecules and externally …

Diversified transcription initiation complexes expand promoter selectivity and tissue-specific gene expression

A Hochheimer, R Tjian - Genes & development, 2003 - genesdev.cshlp.org
Transcription initiation is a key regulatory step in the control of gene expression. Formation
of a preinitiation complex at the right time and at the right promoter is a prerequisite to …

The hierarchy of transcriptional activation: from enhancer to promoter

D Vernimmen, WA Bickmore - Trends in Genetics, 2015 - cell.com
Regulatory elements (enhancers) that are remote from promoters play a critical role in the
spatial, temporal, and physiological control of gene expression. Studies on specific loci …

[HTML][HTML] Ever-changing landscapes: transcriptional enhancers in development and evolution

HK Long, SL Prescott, J Wysocka - Cell, 2016 - cell.com
A class of cis-regulatory elements, called enhancers, play a central role in orchestrating
spatiotemporally precise gene-expression programs during development. Consequently …

Assessing sufficiency and necessity of enhancer activities for gene expression and the mechanisms of transcription activation

RR Catarino, A Stark - Genes & development, 2018 - genesdev.cshlp.org
Enhancers are important genomic regulatory elements directing cell type-specific
transcription. They assume a key role during development and disease, and their …

Promoter architectures and developmental gene regulation

V Haberle, B Lenhard - Seminars in cell & developmental biology, 2016 - Elsevier
Core promoters are minimal regions sufficient to direct accurate initiation of transcription and
are crucial for regulation of gene expression. They are highly diverse in terms of associated …

Characterization of enhancer function from genome-wide analyses

GA Maston, SG Landt, M Snyder… - Annual review of …, 2012 - annualreviews.org
There has been a recent surge in the use of genome-wide methodologies to identify and
annotate the transcriptional regulatory elements in the human genome. Here we review …

Transcriptional regulators form diverse groups with context-dependent regulatory functions

G Stampfel, T Kazmar, O Frank, S Wienerroither… - Nature, 2015 - nature.com
One of the most important questions in biology is how transcription factors (TFs) and
cofactors control enhancer function and thus gene expression. Enhancer activation usually …

A unified architecture of transcriptional regulatory elements

R Andersson, A Sandelin, CG Danko - Trends in Genetics, 2015 - cell.com
Gene expression is precisely controlled in time and space through the integration of signals
that act at gene promoters and gene-distal enhancers. Classically, promoters and …