[HTML][HTML] Base-resolution DNA methylation landscape of zebrafish brain and liver

A Chatterjee, PA Stockwell, JA Horsfield, IM Morison… - Genomics Data, 2014 - Elsevier
Zebrafish (Danio rerio) is a vertebrate model organism that is widely used for studying a
plethora of biological questions, including developmental processes, effects of external cues …

Comparative epigenomic profiling of the DNA methylome in mouse and zebrafish uncovers high interspecies divergence

C Zhang, Y Hoshida, KC Sadler - Frontiers in Genetics, 2016 - frontiersin.org
The DNA methylation landscape is dynamically patterned during development and distinct
methylation patterns distinguish healthy from diseased cells. However, whether tissue …

Differential DNA methylation analysis without a reference genome

J Klughammer, P Datlinger, D Printz, NC Sheffield… - Cell Reports, 2015 - cell.com
Genome-wide DNA methylation mapping uncovers epigenetic changes associated with
animal development, environmental adaptation, and species evolution. To address the lack …

Mapping the zebrafish brain methylome using reduced representation bisulfite sequencing

A Chatterjee, Y Ozaki, PA Stockwell, JA Horsfield… - Epigenetics, 2013 - Taylor & Francis
Reduced representation bisulfite sequencing (RRBS) has been used to profile DNA
methylation patterns in mammalian genomes such as human, mouse and rat. The …

Genome-wide DNA methylation profiling in zebrafish

PJ Murphy, BR Cairns - Methods in Cell Biology, 2016 - Elsevier
Genomic DNA methylation functions to repress gene expression by interfering with
transcription factor binding and/or recruiting repressive chromatin machinery. Recent data …

MethBank: a database integrating next-generation sequencing single-base-resolution DNA methylation programming data

D Zou, S Sun, R Li, J Liu, J Zhang… - Nucleic acids …, 2015 - academic.oup.com
DNA methylation plays crucial roles during embryonic development. Here we present
MethBank (http://dnamethylome. org), a DNA methylome programming database that …

Embryonic DNA methylation: insights from the genomics era

O Bogdanović… - Briefings in functional …, 2014 - academic.oup.com
DNA methylation is an epigenetic mark associated with transcriptional repression and
essential for proper vertebrate development. Because of its association with human …

DNA methylation in zebrafish

MG Goll, ME Halpern - Progress in molecular biology and translational …, 2011 - Elsevier
DNA methylation is crucial for normal development and cellular differentiation in many large-
genome eukaryotes. The small tropical freshwater fish Danio rerio (zebrafish) has recently …

DNA methylation profiling in zebrafish

SF Wu, H Zhang, SS Hammoud, M Potok, DA Nix… - Methods in cell …, 2011 - Elsevier
DNA methylation on cytosine in vertebrates such as zebrafish serves to silence gene
expression by interfering with the binding of certain transcription factors and through the …

Evolutionary conservation of embryonic DNA methylome remodelling in distantly related teleost species

SE Ross, J Vázquez-Marín, KRB Gert… - Nucleic Acids …, 2023 - academic.oup.com
Methylation of cytosines in the CG context (mCG) is the most abundant DNA modification in
vertebrates that plays crucial roles in cellular differentiation and identity. After fertilization …