Protection of CpG islands from DNA methylation is DNA-encoded and evolutionarily conserved

HK Long, HW King, RK Patient, DT Odom… - Nucleic Acids …, 2016 - academic.oup.com
DNA methylation is a repressive epigenetic modification that covers vertebrate genomes.
Regions known as CpG islands (CGIs), which are refractory to DNA methylation, are often …

Sequence determinants, function, and evolution of CpG islands

A Angeloni, O Bogdanovic - Biochemical Society Transactions, 2021 - portlandpress.com
In vertebrates, cytosine-guanine (CpG) dinucleotides are predominantly methylated, with∼
80% of all CpG sites containing 5-methylcytosine (5mC), a repressive mark associated with …

DNA methylation of intragenic CpG islands depends on their transcriptional activity during differentiation and disease

DM Jeziorska, RJS Murray… - Proceedings of the …, 2017 - National Acad Sciences
The human genome contains∼ 30,000 CpG islands (CGIs). While CGIs associated with
promoters nearly always remain unmethylated, many of the∼ 9,000 CGIs lying within gene …

[HTML][HTML] R-loop formation is a distinctive characteristic of unmethylated human CpG island promoters

PA Ginno, PL Lott, HC Christensen, I Korf, F Chédin - Molecular cell, 2012 - cell.com
CpG islands (CGIs) function as promoters for approximately 60% of human genes. Most of
these elements remain protected from CpG methylation, a prevalent epigenetic modification …

[HTML][HTML] CpG islands–'a rough guide'

RS Illingworth, AP Bird - FEBS letters, 2009 - Elsevier
Mammalian genomes are punctuated by DNA sequences containing an atypically high
frequency of CpG sites termed CpG islands (CGIs). CGIs generally lack DNA methylation …

[HTML][HTML] Primate CpG islands are maintained by heterogeneous evolutionary regimes involving minimal selection

NM Cohen, E Kenigsberg, A Tanay - Cell, 2011 - cell.com
Mammalian CpG islands are key epigenomic elements that were first characterized
experimentally as genomic fractions with low levels of DNA methylation. Currently, CpG …

[HTML][HTML] Epigenetic conservation at gene regulatory elements revealed by non-methylated DNA profiling in seven vertebrates

HK Long, D Sims, A Heger, NP Blackledge, C Kutter… - elife, 2013 - elifesciences.org
Two-thirds of gene promoters in mammals are associated with regions of non-methylated
DNA, called CpG islands (CGIs), which counteract the repressive effects of DNA methylation …

Conserved and divergent patterns of DNA methylation in higher vertebrates

N Jiang, L Wang, J Chen, L Wang… - Genome biology and …, 2014 - academic.oup.com
DNA methylation in the genome plays a fundamental role in the regulation of gene
expression and is widespread in the genome of eukaryotic species. For example, in higher …

[HTML][HTML] Loss of CpG island immunity to DNA methylation induced by mutation

B Horsthemke, A Bird - Epigenetics & Chromatin, 2023 - Springer
The inheritance of acquired traits in mammals is a highly controversial topic in biology.
Recently, Takahashi et al.(Cell 186: 715–731, 2023) have reported that insertion of CpG …

GC skew is a conserved property of unmethylated CpG island promoters across vertebrates

SR Hartono, IF Korf, F Chédin - Nucleic acids research, 2015 - academic.oup.com
GC skew is a measure of the strand asymmetry in the distribution of guanines and cytosines.
GC skew favors R-loops, a type of three stranded nucleic acid structures that form upon …