DNA methylation underpins the epigenomic landscape regulating genome transcription in Arabidopsis

L Zhao, Q Zhou, L He, L Deng, R Lozano-Duran, G Li… - Genome biology, 2022 - Springer
Background It is challenging to determine the effect of DNA methylation on the epigenetic
landscape and the function in higher organisms due to the lack of DNA methylation-free …

The value-added genome: building and maintaining genomic cytosine methylation landscapes

SH Rangwala, EJ Richards - Current opinion in genetics & development, 2004 - Elsevier
Epigenetic marks, such as cytosine methylation and post-translational histone modifications,
are important for interpreting and managing eukaryotic genomes. Recent genetic studies in …

Interplay between Active Chromatin Marks and RNA-Directed DNA Methylation in Arabidopsis thaliana

MVC Greenberg, A Deleris, CJ Hale, A Liu, S Feng… - PLoS …, 2013 - journals.plos.org
DNA methylation is an epigenetic mark that is associated with transcriptional repression of
transposable elements and protein-coding genes. Conversely, transcriptionally active …

[HTML][HTML] Highly integrated single-base resolution maps of the epigenome in Arabidopsis

R Lister, RC O'Malley, J Tonti-Filippini, BD Gregory… - Cell, 2008 - cell.com
Deciphering the multiple layers of epigenetic regulation that control transcription is critical to
understanding how plants develop and respond to their environment. Using sequencing-by …

Genome-wide high-resolution mapping and functional analysis of DNA methylation in Arabidopsis

X Zhang, J Yazaki, A Sundaresan, S Cokus, SWL Chan… - Cell, 2006 - cell.com
Cytosine methylation is important for transposon silencing and epigenetic regulation of
endogenous genes, although the extent to which this DNA modification functions to regulate …

Transgenerational stability of the Arabidopsis epigenome is coordinated by CG methylation

O Mathieu, J Reinders, M Čaikovski, C Smathajitt… - Cell, 2007 - cell.com
Maintenance of CG methylation (m CG) patterns is essential for chromatin-mediated
epigenetic regulation of transcription in plants and mammals. However, functional links …

Genome-wide analysis of Arabidopsis thaliana DNA methylation uncovers an interdependence between methylation and transcription

D Zilberman, M Gehring, RK Tran, T Ballinger… - Nature …, 2007 - nature.com
Cytosine methylation, a common form of DNA modification that antagonizes transcription, is
found at transposons and repeats in vertebrates, plants and fungi. Here we have mapped …

DNA methylation dynamics during early plant life

D Bouyer, A Kramdi, M Kassam, M Heese, A Schnittger… - Genome biology, 2017 - Springer
Background Cytosine methylation is crucial for gene regulation and silencing of
transposable elements in mammals and plants. While this epigenetic mark is extensively …

The causes and consequences of DNA methylome variation in plants

DK Seymour, C Becker - Current opinion in plant biology, 2017 - Elsevier
Highlights•Epigenetic variation in plants is frequently linked to genetic variation.•Single large
effect mutations perturb the epigenetic landscape in trans.•DNA methylation regulates …

Putting DNA methylation in context: from genomes to gene expression in plants

CE Niederhuth, RJ Schmitz - Biochimica et Biophysica Acta (BBA)-Gene …, 2017 - Elsevier
Plant DNA methylation is its own language, interpreted by the cell to maintain silencing of
transposons, facilitate chromatin structure, and to ensure proper expression of some genes …