Inherited DNA methylation primes the establishment of accessible chromatin during genome activation

G Liu, W Wang, S Hu, X Wang, Y Zhang - Genome Research, 2018 - genome.cshlp.org
For animals, epigenetic modifications can be globally or partially inherited from gametes
after fertilization, and such information is required for proper transcriptional regulation …

Developmental features of DNA methylation during activation of the embryonic zebrafish genome

IS Andersen, AH Reiner, H Aanes, P Aleström, P Collas - Genome biology, 2012 - Springer
Background Zygotic genome activation (ZGA) occurs at the mid-blastula transition (MBT) in
zebrafish and is a period of extensive chromatin remodeling. Genome-scale gametic …

Reprogramming the maternal zebrafish genome after fertilization to match the paternal methylation pattern

ME Potok, DA Nix, TJ Parnell, BR Cairns - Cell, 2013 - cell.com
Early vertebrate embryos must achieve totipotency and prepare for zygotic genome
activation (ZGA). To understand this process, we determined the DNA methylation (DNAme) …

Widespread enhancer dememorization and promoter priming during parental-to-zygotic transition

B Zhang, X Wu, W Zhang, W Shen, Q Sun, K Liu… - Molecular cell, 2018 - cell.com
The epigenome plays critical roles in controlling gene expression and development.
However, how the parental epigenomes transit to the zygotic epigenome in early …

[HTML][HTML] Genome-wide epigenetic cross-talk between DNA methylation and H3K27me3 in zebrafish embryos

E de la Calle Mustienes, JL Gómez-Skarmeta… - Genomics data, 2015 - Elsevier
DNA methylation and histone modifications are epigenetic marks implicated in the complex
regulation of vertebrate embryogenesis. The cross-talk between DNA methylation and …

Genes for embryo development are packaged in blocks of multivalent chromatin in zebrafish sperm

SF Wu, H Zhang, BR Cairns - Genome research, 2011 - genome.cshlp.org
In mature human sperm, genes of importance for embryo development (ie, transcription
factors) lack DNA methylation and bear nucleosomes with distinctive histone modifications …

Deep sequencing and de novo assembly of the mouse oocyte transcriptome define the contribution of transcription to the DNA methylation landscape

L Veselovska, SA Smallwood, H Saadeh, KR Stewart… - Genome biology, 2015 - Springer
Background Previously, a role was demonstrated for transcription in the acquisition of DNA
methylation at imprinted control regions in oocytes. Definition of the oocyte DNA methylome …

Associations between DNA methylation and gene regulation depend on chromatin accessibility during transgenerational plasticity

SN Bogan, ME Strader, GE Hofmann - BMC biology, 2023 - Springer
Background Epigenetic processes are proposed to be a mechanism regulating gene
expression during phenotypic plasticity. However, environmentally induced changes in DNA …

Genomics of CpG methylation in developing and developed zebrafish

DM McGaughey, HO Abaan, RM Miller… - G3: Genes …, 2014 - academic.oup.com
DNA methylation is a dynamic process through which specific chromatin modifications can
be stably transmitted from parent to daughter cells. A large body of work has suggested that …

Single-cell-resolved dynamics of chromatin architecture delineate cell and regulatory states in zebrafish embryos

AC McGarvey, W Kopp, D Vučićević, K Mattonet… - Cell Genomics, 2022 - cell.com
DNA accessibility of cis-regulatory elements (CREs) dictates transcriptional activity and
drives cell differentiation during development. While many genes regulating embryonic …