Personalized epigenomic signatures that are stable over time and covary with body mass index

AP Feinberg, RA Irizarry, D Fradin, MJ Aryee… - Science translational …, 2010 - science.org
The epigenome consists of non–sequence-based modifications, such as DNA methylation,
that are heritable during cell division and that may affect normal phenotypes and …

[HTML][HTML] Heterochromatin dynamics during the differentiation process revealed by the DNA methylation reporter mouse, MethylRO

J Ueda, K Maehara, D Mashiko, T Ichinose, T Yao… - Stem Cell Reports, 2014 - cell.com
In mammals, DNA is methylated at CpG sites, which play pivotal roles in gene silencing and
chromatin organization. Furthermore, DNA methylation undergoes dynamic changes during …

[HTML][HTML] Genome-wide profiling of DNA methylation in human cancer cells

K Ogoshi, S Hashimoto, Y Nakatani, W Qu, K Oshima… - Genomics, 2011 - Elsevier
Global changes in DNA methylation correlate with altered gene expression and genomic
instability in cancer. We have developed a methylation-specific digital sequencing (MSDS) …

[HTML][HTML] DNA methylation profile dynamics of tissue-dependent and differentially methylated regions during mouse brain development

K Hirabayashi, K Shiota, S Yagi - BMC genomics, 2013 - Springer
Background Tissues and their component cells have unique DNA methylation profiles
comprising DNA methylation patterns of tissue-dependent and differentially methylated …

Validation of a DNA methylation microarray for 285,000 CpG sites in the mouse genome

CA Garcia-Prieto, D Álvarez-Errico, E Musulen… - Epigenetics, 2022 - Taylor & Francis
Mouse has been extensively used as a model organism in many studies to characterize
biological pathways and drug effects and to mimic human diseases. Similar DNA sequences …

High definition profiling of mammalian DNA methylation by array capture and single molecule bisulfite sequencing

E Hodges, AD Smith, J Kendall, Z Xuan, K Ravi… - Genome …, 2009 - genome.cshlp.org
DNA methylation stabilizes developmentally programmed gene expression states. Aberrant
methylation is associated with disease progression and is a common feature of cancer …

[HTML][HTML] Comparative epigenomic profiling of the DNA methylome in mouse and zebrafish uncovers high interspecies divergence

C Zhang, Y Hoshida, KC Sadler - Frontiers in Genetics, 2016 - frontiersin.org
The DNA methylation landscape is dynamically patterned during development and distinct
methylation patterns distinguish healthy from diseased cells. However, whether tissue …

[HTML][HTML] Whole genome DNA methylation: beyond genes silencing

R Tirado-Magallanes, K Rebbani, R Lim, S Pradhan… - Oncotarget, 2017 - ncbi.nlm.nih.gov
The combination of DNA bisulfite treatment with high-throughput sequencing technologies
has enabled investigation of genome-wide DNA methylation at near base pair level …

Epigenetics: differential DNA methylation in mammalian somatic tissues

H Nagase, S Ghosh - The FEBS journal, 2008 - Wiley Online Library
Epigenetics refers to heritable phenotypic alterations in the absence of DNA sequence
changes, and DNA methylation is one of the extensively studied epigenetic alterations. DNA …

CpG methylation recruits sequence specific transcription factors essential for tissue specific gene expression

R Chatterjee, C Vinson - Biochimica et Biophysica Acta (BBA)-Gene …, 2012 - Elsevier
CG methylation is an epigenetically inherited chemical modification of DNA found in plants
and animals. In mammals it is essential for accurate regulation of gene expression and …