Prevalent role of gene features in determining evolutionary fates of whole-genome duplication duplicated genes in flowering plants

W Jiang, Y Liu, E Xia, L Gao - Plant physiology, 2013 - academic.oup.com
The evolution of genes and genomes after polyploidization has been the subject of
extensive studies in evolutionary biology and plant sciences. While a significant number of …

[HTML][HTML] Gene duplication and evolution in recurring polyploidization–diploidization cycles in plants

X Qiao, Q Li, H Yin, K Qi, L Li, R Wang, S Zhang… - Genome biology, 2019 - Springer
Background The sharp increase of plant genome and transcriptome data provide valuable
resources to investigate evolutionary consequences of gene duplication in a range of taxa …

Function relaxation followed by diversifying selection after whole-genome duplication in flowering plants

H Guo, TH Lee, X Wang, AH Paterson - Plant Physiology, 2013 - academic.oup.com
Episodes of whole-genome duplication (WGD) followed by gene loss dominate the
evolutionary history of flowering plants. Despite the importance of understanding gene …

Evolutionary dynamics of duplicated genes in plants

A Lawton-Rauh - Molecular phylogenetics and evolution, 2003 - Elsevier
Gene duplication, arising from region-specific duplication or genome-wide polyploidization,
is a prominent feature in plant genome evolution. Understanding the mechanisms …

Evolution of gene duplication in plants

N Panchy, M Lehti-Shiu, SH Shiu - Plant physiology, 2016 - academic.oup.com
Ancient duplication events and a high rate of retention of extant pairs of duplicate genes
have contributed to an abundance of duplicate genes in plant genomes. These duplicates …

[PDF][PDF] Distinct expression and methylation patterns for genes with different fates following a single whole-genome duplication in flowering plants

T Shi, RS Rahmani, PF Gugger, M Wang… - Molecular Biology …, 2020 - academic.oup.com
For most sequenced flowering plants, multiple whole-genome duplications (WGDs) are
found. Duplicated genes following WGD often have different fates that can quickly disappear …

[HTML][HTML] Both mechanism and age of duplications contribute to biased gene retention patterns in plants

HVS Rody, GJ Baute, LH Rieseberg, LO Oliveira - BMC genomics, 2017 - Springer
Background All extant seed plants are successful paleopolyploids, whose genomes carry
duplicate genes that have survived repeated episodes of diploidization. However, the …

Evolutionary fates and dynamic functionalization of young duplicate genes in Arabidopsis genomes

J Wang, F Tao, NC Marowsky, C Fan - Plant Physiology, 2016 - academic.oup.com
Gene duplication is a primary means to generate genomic novelties, playing an essential
role in speciation and adaptation. Particularly in plants, a high abundance of duplicate …

[HTML][HTML] Rapid functional divergence after small-scale gene duplication in grasses

X Jiang, R Assis - BMC Evolutionary Biology, 2019 - Springer
Background Gene duplication has played an important role in the evolution and
domestication of flowering plants. Yet little is known about how plant duplicate genes evolve …

[HTML][HTML] Nonrandom divergence of gene expression following gene and genome duplications in the flowering plant Arabidopsis thaliana

T Casneuf, S De Bodt, J Raes, S Maere, Y Van de Peer - Genome biology, 2006 - Springer
Background Genome analyses have revealed that gene duplication in plants is rampant.
Furthermore, many of the duplicated genes seem to have been created through ancient …